Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33050 64 / 5e-10 unknown protein AT3G49490 61 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149601 [exp] 588 / 0 AT1G33050 50 / 1e-05 unknown protein Potri.004G080501 [exp] 140 / 3e-39 ND / Potri.003G206701 [exp] 139 / 6e-39 AT3G49490 49 / 4e-08 unknown protein Potri.002G230100 [exp] 139 / 8e-39 AT3G49490 45 / 6e-07 unknown protein Potri.015G003700 [exp] 79 / 1e-14 AT3G49490 107 / 2e-23 unknown protein Potri.012G007000 [exp] 75 / 2e-13 AT3G49490 104 / 2e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032925 [exp] 57 / 1e-07 AT3G49490 92 / 3e-18 unknown protein Lus10015581 [exp] 50 / 1e-05 AT3G49490 91 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G452300.3 pacid=42791386 polypeptide=Potri.001G452300.3.p locus=Potri.001G452300 ID=Potri.001G452300.3.v4.1 annot-version=v4.1 ATGGCCAGTGACACAAAAAGAGGATCTCTTTCTCGTTTATCACCATTAGCTAGGCCTTTTACCTTGAGCAAACCCAATAATTCAAGCTTTAGTCCTTCAA ATTCTGAGCTTGATCGGTCCTTTTCAAGTTTCAGTTTAGAAGGTGACTCCTTTGCTTTTTATCCTCAATACCCACCAGGGGTTTTGCAAGTTTCAGCTGA TTTTTCAAGTCTTGCCCGCGATTCTTCACTTCAAGATACAAGCTTTAACCCTTCCAGTTCCATGCTTGATCGGTCCTTTTCAAGTTTCAGTTTAGAAGGC GACACCTTTGCTTATTATCCTCAATACCCATCTGGGGTTTTGCAAGGTTCAGCTGATTTTGGTTTGTTTACTGAGTCAAAGTCAGACTTTGATGCTGTGC CTGTAACCAAGTCCACTGAACTTGGCTATGAGGCTCACAAGAGTGGTGATCTTCGAGGGATTCTTCACTGGAAAGATAAGCATGGTGGTTTTTCAATGTT TAATGATGACCCCACGAAACAAGCAGGATCTCCTGCTGAAGGATTGAAGCTGAGTCCCGAAACATCTGATAGTTTGTGCGGAAAACTCTCTGGGATCTCA TTAAAGGATCATGAAGTCAGACCTAAAAGAACTAGGGAAATTGACTCTCAATGTGTGCCAATCTCTTTGAAGTTCTCAAGGACATCAGATTTGAACTCTT CTGCCATACTTCAAGATCCTCAAAGCGGGATAAATTACCTACCACCATCAGTATCTTGGAGCTCCTGTGATACAAACATTGCTTATTTTGGGAGAAGCTT ATCACAGCAACTTGATTTTCATGCAGCCAAACAGAATGTTCCCCCTTCATCAGATATCAATTCTTTGCCAGTTTTAGTTTCCGAGCCATCAGTAGCTAGT ACAGGCTATTTACCCTTTAATCATGTGTTGTCAGAGAACCTAGATTCTGATGGAGATGGTGGAGTCAGCAAAAATAACTTTCTTGGGTATGGTCAAGCAA GTTTAAAGAAGCCTCATGCTGTTGTGGATAAAAGCAAGGAAGTTTTCCATAATAAAGTCCTGACAGATAAAGGCAAAGAAGGAAAAATGGGCAAACCTGT CACTCACGAGGTTATGGAGCCCATGCCAATGGCAAAGTCTGAGCTGCAAATCACTTGTCCCAGTCCTCCTATTGATTTGACTCTGGAAGTGGATAAAAGC AAGGAAGTTTTCCATCATAAAGTCCTGGCAGATAAAGGCAAAGAAGGAAAATTGGGCAAACCTGTCACCCATGAGGTTATGGAGCCCGTGCCAATGGCAA AGTCTGAGCTGCAAATCACTTGTCCCAGTCTTCTTATTGATTTGACCCTGGAATCCCTTGGTATTAAAGAAAGTGATCCTATTGAAAATTCTTCTAAAAT AATCAACGAGAATGATTCTGATCTGGATTCTCCTTGTTGGAAAGGAAAACTTGCCGCTGAGCAATCAAGCTGTGAAGTTTCTGTACCTGATAATTTCCAG CATCTTAAAAGCGAACAAGAAGCATGCAGTTATTTAAATCCTCTTGCGCCTCATTTTTTCCCCAGCAGTGACAAACAAAAAGTAAATTACTGTGGAAATG AAGGTGATGGAAATGATTGTTTTTCTTTCCAGAAGACTGCGTCTTCTGTGGTTAATTTATTCTCCAGAGAACAGAGACTACAACATTCCGCTACAGCTGG ATCATCTTCTTCAGAACAGAGCAGTATTACTGAGGCACATTGCTATAGTGACATGCATGTTCCTAATAAGGAATATGAGCTACTCACTGACTCTAGCAGT AGCTCCATGCATGGCTCATCTTGTGTGGTTCTACCATCTGTTCTGGAAGATTACTTCACATCTAGTGGCCAGCTTCTGACTGGGCAATGTGTTGGTGGAT TTGGGAAGGCTATCAAGGATACAGCACCTAATGGTTCAACTAGTGTGTCGTTGTTTGCAAGCAAACATGTCTTCGATTCATCGTCCTGTAGAGAAGGTGT TTCTACTGATTTAAGTGAAACATATGGGGGTGCAACTAAGCCTTTGTGCTCACCTCCAAGATTAGATTTTCAAATAGTGGTTAAAACAATGAATGAACTG TCAGAATTGCTTATGCAAAACTGCACAAATGATTTAGATTCTCTGAATGAGCATGAACATGATATAATCAAGCGCATTATCCATAATCTTACTCTGTGTA TCAGAAACAGGGTTGGAGAACATACTCTTATGTCTGAATCAAGTCATCCTCACACTTCATATTGTGTTAGGAAATCAACTCATCTAAACAAGTGCTCGAA CATGGAACTTCAAACAACAAGGACAAAGGCTGTGATGGTTTCGCATGAACTTGGGCATCAGAATAAGCATGAAAGGCAGATGAGTTCTACTAGTTTTAGG GAGAGATTCCTGGATTCTTTAAATGCAAGGAATGGAGGATTCAATAAAAATGAAGACATTACTCAGGTCAATGAGAAGGCTCTGGAAGGACATTATGAAC TCGAGGAAGAAGAGAACCCGCAAGTTTTGTTCTACAAGAATTTGTGGCTCGAGGCTGAAGCAGCTCTTTGTTCCATGAAGTATAAAGCTTCTGTTCTGGG TATGAAAACTGAGATGGAAAAGATAAAGATGGCAATAAGATAA
AA sequence Show only first row Show all	>Potri.001G452300.3 pacid=42791386 polypeptide=Potri.001G452300.3.p locus=Potri.001G452300 ID=Potri.001G452300.3.v4.1 annot-version=v4.1 MASDTKRGSLSRLSPLARPFTLSKPNNSSFSPSNSELDRSFSSFSLEGDSFAFYPQYPPGVLQVSADFSSLARDSSLQDTSFNPSSSMLDRSFSSFSLEG DTFAYYPQYPSGVLQGSADFGLFTESKSDFDAVPVTKSTELGYEAHKSGDLRGILHWKDKHGGFSMFNDDPTKQAGSPAEGLKLSPETSDSLCGKLSGIS LKDHEVRPKRTREIDSQCVPISLKFSRTSDLNSSAILQDPQSGINYLPPSVSWSSCDTNIAYFGRSLSQQLDFHAAKQNVPPSSDINSLPVLVSEPSVAS TGYLPFNHVLSENLDSDGDGGVSKNNFLGYGQASLKKPHAVVDKSKEVFHNKVLTDKGKEGKMGKPVTHEVMEPMPMAKSELQITCPSPPIDLTLEVDKS KEVFHHKVLADKGKEGKLGKPVTHEVMEPVPMAKSELQITCPSLLIDLTLESLGIKESDPIENSSKIINENDSDLDSPCWKGKLAAEQSSCEVSVPDNFQ HLKSEQEACSYLNPLAPHFFPSSDKQKVNYCGNEGDGNDCFSFQKTASSVVNLFSREQRLQHSATAGSSSSEQSSITEAHCYSDMHVPNKEYELLTDSSS SSMHGSSCVVLPSVLEDYFTSSGQLLTGQCVGGFGKAIKDTAPNGSTSVSLFASKHVFDSSSCREGVSTDLSETYGGATKPLCSPPRLDFQIVVKTMNEL SELLMQNCTNDLDSLNEHEHDIIKRIIHNLTLCIRNRVGEHTLMSESSHPHTSYCVRKSTHLNKCSNMELQTTRTKAVMVSHELGHQNKHERQMSSTSFR ERFLDSLNARNGGFNKNEDITQVNEKALEGHYELEEEENPQVLFYKNLWLEAEAALCSMKYKASVLGMKTEMEKIKMAIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33050			unknown protein		Potri.001G452300 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G029300 [exp]	2.44	0.8382
AT1G45231			S-adenosyl-L-methionine-depend...		Potri.014G028000 [exp]	3.87	0.8281
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	4.89	0.8109
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	5.74	0.8368
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	6.40	0.8503
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	10.39	0.8201
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	12.00	0.8306
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	13.56	0.7807	MBD912
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	14.00	0.8172
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	16.24	0.8166

Compare expression of checked genes

Potri.001G452300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.