Plant FIBer expression Database

Potri.001G452500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33055 49 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G149400
[exp]
70 / 8e-18 AT1G33055 65 / 3e-16 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010148
[exp]
64 / 1e-13 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.001G452500.2 pacid=42788904 polypeptide=Potri.001G452500.2.p locus=Potri.001G452500 ID=Potri.001G452500.2.v4.1 annot-version=v4.1
ATGATACTGGTGGCAATAGTGGCGGAGCTGATGGAGGAGTACATGGCGTTTCTGACTAGGGTTTTGGAACATGTGTTTAATGATGCACCTTTTCCAAGAA
GGATAATGTTCTTGGTTTGCCATAATAATGATGACAAAGACATGCAGCCCTCAAAATTTCCCAGTGCTTATCTAATTTTATCGAGATTTCTCTGTACTTG
TAAATATTCTTTGCTTGATATGTTATTTCTTGCTGCTTTTTAG
AA sequence
>Potri.001G452500.2 pacid=42788904 polypeptide=Potri.001G452500.2.p locus=Potri.001G452500 ID=Potri.001G452500.2.v4.1 annot-version=v4.1
MILVAIVAELMEEYMAFLTRVLEHVFNDAPFPRRIMFLVCHNNDDKDMQPSKFPSAYLILSRFLCTCKYSLLDMLFLAAF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33055 unknown protein Potri.001G452500
[exp]
0 1
AT1G75810 unknown protein Potri.002G020200
[exp]
2.00 0.8461
AT2G19810 C3HZnF AtOZF1 Oxidation-related Zinc Finger ... Potri.018G058600
[exp]
3.87 0.7859
AT5G12330 LRP1 LATERAL ROOT PRIMORDIUM 1, Lat... Potri.003G196100
[exp]
4.24 0.7112
AT1G24625 C2H2ZnF ZFP7 zinc finger protein 7 (.1) Potri.001G298700
[exp]
5.65 0.7441
AT1G14720 ATXTH28, EXGT-A... xyloglucan endotransglycosylas... Potri.010G102300
[exp]
7.21 0.6911 Pt-EXGT.3
AT1G07380 Neutral/alkaline non-lysosomal... Potri.016G110000
[exp]
8.94 0.6953
AT3G48530 KING1 SNF1-related protein kinase re... Potri.015G094700
[exp]
11.61 0.6930
AT1G35430 unknown protein Potri.019G079800
[exp]
12.40 0.6684
AT3G22440 FRIGIDA-like protein (.1) Potri.008G153000
[exp]
15.49 0.6915
AT2G01260 Protein of unknown function (D... Potri.010G120700
[exp]
15.49 0.6561

Potri.001G452500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.