Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1) AT2G37950 61 / 6e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 58 / 8e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 55 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G03180 54 / 3e-08 RING/U-box superfamily protein (.1.2) AT5G38070 53 / 5e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G47550 51 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT2G34200 51 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G62460 51 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 50 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149200 [exp] 404 / 3e-144 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.009G039700 [exp] 61 / 2e-11 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G126600 [exp] 58 / 7e-10 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.006G094000 [exp] 58 / 8e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G111700 [exp] 58 / 9e-10 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.001G246700 [exp] 57 / 9e-10 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 57 / 1e-09 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G122300 [exp] 57 / 2e-09 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 57 / 2e-09 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008286 [exp] 281 / 1e-95 AT2G45530 258 / 1e-86 RING/U-box superfamily protein (.1) Lus10033252 [exp] 276 / 1e-93 AT2G45530 258 / 7e-87 RING/U-box superfamily protein (.1) Lus10028249 [exp] 68 / 2e-13 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 67 / 7e-13 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 66 / 9e-13 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 65 / 3e-12 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10000211 [exp] 59 / 1e-11 AT2G45530 45 / 3e-07 RING/U-box superfamily protein (.1) Lus10040716 [exp] 62 / 2e-11 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 62 / 2e-11 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 59 / 5e-10 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.001G452800.2 pacid=42792716 polypeptide=Potri.001G452800.2.p locus=Potri.001G452800 ID=Potri.001G452800.2.v4.1 annot-version=v4.1 ATGCAGAATGACGTGTCTGATAGAGACAGCACCACCAGAGCTGGTGCTGGTGGTTTAGCCCTTACTGAGGTTGACCTGGAGAAGCAGGATAACAGTAAGG CTTTGCCGCAAGAAGGCGGTAATGAGATCTTGTCAGGGAATTCTGGTTTTCCACCAGTGATTGCCATTGCGTTTTCTAATGGTGAGTCTACTGCTCATGT GGCTGCCAGCAAGGAAGAGTTGCCTGGTGTAGATTCTCCCAGAAAAGGGTCCTTGTCAAGGACTTCAAGTCTGCACGAACAATGCAGAGTTTGCCAGCAG GAGAAGGAAGAAGTTCTCATAGATCTTGGATGCAAATGTAAAGGTGGTCTTGCAAAAGCCCACCGCACATGTATAGATACCTGGTTTAGCAGAAGAGGAT CCAACAAATGTGAGATATGCCAGGCTGTAGCTGTAAATGTTTCACCTCCAGAATCCCAGCCAAGTACAAACTACTGGGTATGGAGAATCGACCCTAACTT AAGACCACGAGATCACAATAGGGGTTGTTTTAGTCCACTTTGGGTGGCATTCTCAATTCTTACTGGTGGCCTCTTGTTGGATGTGCTGATATCCATCACC CTTGGTGTCTCTGCCTTACCTGTTAACATAATAATCGGGGTCATTGTTGTGCTCGGACTTGGAACCGCGCTTCGGCTAGCCCTGGACTTCTGCATTAAGT GGAGTTTTAGGAGACCAGTGCAGAGGGCAGATGCCAATGTGAATCACGGGTATCATCCAGCTTTGTAG
AA sequence Show only first row Show all	>Potri.001G452800.2 pacid=42792716 polypeptide=Potri.001G452800.2.p locus=Potri.001G452800 ID=Potri.001G452800.2.v4.1 annot-version=v4.1 MQNDVSDRDSTTRAGAGGLALTEVDLEKQDNSKALPQEGGNEILSGNSGFPPVIAIAFSNGESTAHVAASKEELPGVDSPRKGSLSRTSSLHEQCRVCQQ EKEEVLIDLGCKCKGGLAKAHRTCIDTWFSRRGSNKCEICQAVAVNVSPPESQPSTNYWVWRIDPNLRPRDHNRGCFSPLWVAFSILTGGLLLDVLISIT LGVSALPVNIIIGVIVVLGLGTALRLALDFCIKWSFRRPVQRADANVNHGYHPAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	0	1
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	2.00	0.7648
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	2.82	0.7826
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	4.24	0.7758	EXP2.10
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	6.92	0.7761
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	7.74	0.7559
AT1G80120			Protein of unknown function (D...		Potri.006G113800 [exp]	10.95	0.7213
AT1G26160			Metal-dependent phosphohydrola...		Potri.010G133001 [exp]	13.03	0.7020
AT5G01020			Protein kinase superfamily pro...		Potri.006G113600 [exp]	14.28	0.6771
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	14.83	0.7139
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	15.42	0.7421

Compare expression of checked genes

Potri.001G452800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.