Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 370 / 3e-127 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 330 / 2e-111 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 297 / 1e-98 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G01430 283 / 5e-93 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 273 / 2e-89 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01450 270 / 3e-88 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G18200 244 / 3e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11450 237 / 6e-76 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G09380 234 / 5e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 232 / 4e-73 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149000 [exp] 675 / 0 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 418 / 2e-146 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 409 / 1e-142 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 244 / 6e-78 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G233600 [exp] 240 / 3e-76 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.001G108600 [exp] 238 / 2e-75 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 236 / 1e-74 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 236 / 2e-74 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 232 / 7e-73 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 398 / 3e-138 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 397 / 5e-138 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 251 / 1e-80 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 247 / 9e-79 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10020987 [exp] 239 / 3e-75 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 238 / 2e-73 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 234 / 2e-73 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 233 / 2e-73 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 231 / 2e-72 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030169 [exp] 221 / 2e-70 AT3G30340 211 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G453000.1 pacid=42788617 polypeptide=Potri.001G453000.1.p locus=Potri.001G453000 ID=Potri.001G453000.1.v4.1 annot-version=v4.1 ATGGCTGGTTTGAAGAGCTGTGATGAATGGAAACCTTTCATAGCAATGATAACAATTGATTTTGCTTTTTCCATTGTGAATATTCTTCTCAAGAAAGTCC TTGATGAGGGGATTAACCGTTTGGTCCTTATCACATACCGGCTTTCGATTTCTGCTATTTTCTTGGGTCCTATCGGCTACTTCCGGGAAAGGGGTAGCAG ACCGCCGCTCACATTTCGCATCTTATGTTACCTGTTCCTCAGTGCGATTGTTGGGGCATCACTGACACAATACTTCTTCCTTATCGGCATTCAATATACA TCTGCTACATTTTCATGTGCCTTCATCAACATGGTTCCTGTCGTTACGTTTATAATGGCACTGCCATTCAAAATGGAGACTGTTCATATAAAATCCAATA GCGGAAAAGCCAAAGTACTCGGTACCCTGGTGTGTGTTGCTGGTGCCATGCTGTTGACTCTCATCCGAGGAGCACCATTATTTAACAATTCACCTGGTCA AGCTGTAACTCGAGCCATGGATCATAGCCTAAAGCTGAGCCAAACTAAAAGGGCCGGAAGATGGACCTTTGGTTGTATTACTTTGCTTGTTGGAACGCTG TTGTGGTCTGGTTGGTTTGTGCTTCAATCACATATTGGAAGGAGATACCCCTGCCAATGTTCTAGCACTGCCATTATGTCCTTCTTTGGTGCCATTCAGT CAGCTATTTTATGCTTGTCCACTGAAAGGAGCCTCTCCATATGGGTTCTGAAGGGGAAAATAGAAATTATAACTGTCCTGTATGCTGGAATCATAGGATC AGGCTTGTGCTATGTGGGCATGTCATGGTGTGTTAAGAAAAGGGGTCCAGTCTTTACAGCAGCATTCAGTCCCCTAGTTCAGATAATGGCAGCCATGCTT GATGTCCCTATCCTCCATGAGGAACTCTATCTTGGCAGTTTGCTGGGATCCATCTTTGTGATAATTGGCTTGTACATTCTTCTTTGGGGTAAGAACAAAG AAATGCAGAATCACGCAACAAGAGTAGCTCAAGAAGCTGAAGAGATAAAGGAACAAGATCCCCCCTTACAGGTTGTCAGTACTGTCTCTTGTGATTCAAG GTGTCCTTGA
AA sequence Show only first row Show all	>Potri.001G453000.1 pacid=42788617 polypeptide=Potri.001G453000.1.p locus=Potri.001G453000 ID=Potri.001G453000.1.v4.1 annot-version=v4.1 MAGLKSCDEWKPFIAMITIDFAFSIVNILLKKVLDEGINRLVLITYRLSISAIFLGPIGYFRERGSRPPLTFRILCYLFLSAIVGASLTQYFFLIGIQYT SATFSCAFINMVPVVTFIMALPFKMETVHIKSNSGKAKVLGTLVCVAGAMLLTLIRGAPLFNNSPGQAVTRAMDHSLKLSQTKRAGRWTFGCITLLVGTL LWSGWFVLQSHIGRRYPCQCSSTAIMSFFGAIQSAILCLSTERSLSIWVLKGKIEIITVLYAGIIGSGLCYVGMSWCVKKRGPVFTAAFSPLVQIMAAML DVPILHEELYLGSLLGSIFVIIGLYILLWGKNKEMQNHATRVAQEAEEIKEQDPPLQVVSTVSCDSRCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	0	1
					Potri.010G076425 [exp]	2.23	0.9230
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	4.12	0.9447
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	4.69	0.9380
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	7.21	0.9239
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	7.34	0.9126
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	7.54	0.9331
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	9.16	0.9180
AT1G03670			ankyrin repeat family protein ...		Potri.013G133900 [exp]	13.74	0.9179
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	14.42	0.8933
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101500 [exp]	15.16	0.8959

Compare expression of checked genes

Potri.001G453000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.