Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47610 132 / 3e-39 RING/U-box superfamily protein (.1) AT4G17245 117 / 3e-33 RING/U-box superfamily protein (.1) AT1G49230 97 / 7e-25 RING/U-box superfamily protein (.1) AT5G05280 82 / 1e-19 RING/U-box superfamily protein (.1) AT1G49220 81 / 2e-18 RING/U-box superfamily protein (.1) AT3G18773 80 / 3e-18 RING/U-box superfamily protein (.1) AT3G10910 79 / 3e-18 RING/U-box superfamily protein (.1) AT1G49210 78 / 1e-17 RING/U-box superfamily protein (.1) AT4G17905 79 / 2e-17 ATL4H RING/U-box superfamily protein (.1) AT1G49200 78 / 2e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147900 [exp] 263 / 5e-90 AT5G47610 123 / 1e-35 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 92 / 7e-23 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 92 / 7e-23 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 88 / 4e-21 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 85 / 2e-20 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 83 / 9e-20 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 82 / 6e-19 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 79 / 8e-18 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 78 / 1e-17 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033515 [exp] 89 / 2e-21 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10022743 [exp] 83 / 1e-19 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10020859 [exp] 82 / 1e-18 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10006786 [exp] 81 / 1e-18 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 80 / 2e-18 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10029037 [exp] 79 / 2e-18 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10005817 [exp] 81 / 3e-18 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005818 [exp] 79 / 3e-18 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10005814 [exp] 78 / 2e-17 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10025146 [exp] 77 / 2e-17 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G453800.1 pacid=42789774 polypeptide=Potri.001G453800.1.p locus=Potri.001G453800 ID=Potri.001G453800.1.v4.1 annot-version=v4.1 ATGAGACCAGCACCACTAGAAGCAGAAGCAGCAGCAGCGAACATCAGTCATCTATCTCCACCACCACTCCATTCTAGAGCTCCATCATGTGATCCTCAAG TTCATAGCTGCAAATGGTGGCCTTACTCAAACTCGAATGATTTTGGAGCCAACACAGCTATGATCCTCATCATTCTCCTCTGTGCACTCATTTGTGCTTT GGTTCTCAACACAGCTATTCGATGGTTCTTGCGAAGCAATAACAATAACTCATCAGACCGCCTTGGGGAACTTGAGGAGCAGAGGAAACCCAAAGATGAG GCAGACATGGCAACGCTAGTGCTGGCTACGACACAGGTGTATTCTGCTGGAATGAAGCTTGGTGGGGTGGAGGCAGATTGCGCTATTTGCTTGTCAGAAT TCGTGGAGGGTGAGGGGATTCGGGTGTTAGGGAGATGTGACCATGGATTCCATGTCCTTTGTATAGAAAAATGGTTGTCTTCTCATTCTTCCTGTCCTAC TTGCCGCCGTAGCTGTCTTGCTTCCTCCCCCTCTTCACCAGAACCTGACAATTGTAGCGCAGGAAATGGCCACGACAGCAACTCTTCTCAATCAGCAGAA CCTGAAAGAGCTGCAGACAATCTGAGCACTAATGGAAACATACCAGTGTAG
AA sequence Show only first row Show all	>Potri.001G453800.1 pacid=42789774 polypeptide=Potri.001G453800.1.p locus=Potri.001G453800 ID=Potri.001G453800.1.v4.1 annot-version=v4.1 MRPAPLEAEAAAANISHLSPPPLHSRAPSCDPQVHSCKWWPYSNSNDFGANTAMILIILLCALICALVLNTAIRWFLRSNNNNSSDRLGELEEQRKPKDE ADMATLVLATTQVYSAGMKLGGVEADCAICLSEFVEGEGIRVLGRCDHGFHVLCIEKWLSSHSSCPTCRRSCLASSPSSPEPDNCSAGNGHDSNSSQSAE PERAADNLSTNGNIPV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	0	1
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	9.48	0.7875	RHD2.2
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	10.77	0.7984
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	10.81	0.7970
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	12.32	0.7656
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.008G133100 [exp]	13.26	0.7618
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	14.86	0.7598
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	15.09	0.8022
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.002G133632 [exp]	16.97	0.7372
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	17.54	0.7902
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.011G058900 [exp]	19.44	0.7750

Compare expression of checked genes

Potri.001G453800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.