Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33140 332 / 1e-117 PGY2 PIGGYBACK2, Ribosomal protein L6 family (.1) AT1G33120 332 / 1e-117 Ribosomal protein L6 family (.1) AT4G10450 327 / 6e-116 Ribosomal protein L6 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454101 [exp] 391 / 3e-141 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G454000 [exp] 390 / 7e-141 AT1G33140 331 / 2e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.011G147700 [exp] 382 / 8e-138 AT4G10450 331 / 2e-117 Ribosomal protein L6 family (.1) Potri.011G148700 [exp] 382 / 2e-137 AT1G33140 330 / 4e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.014G153000 [exp] 44 / 2e-05 AT1G05190 338 / 3e-119 embryo defective 2394, Ribosomal protein L6 family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015588 [exp] 361 / 4e-129 AT1G33140 350 / 4e-125 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10032962 [exp] 357 / 8e-128 AT1G33140 345 / 4e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10005286 [exp] 357 / 9e-128 AT1G33140 347 / 1e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10032918 [exp] 303 / 9e-106 AT1G33140 301 / 9e-105 PIGGYBACK2, Ribosomal protein L6 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00347 [poplar] [flax] Ribosomal_L6 Ribosomal protein L6
Representative CDS sequence Show only first row Show all	>Potri.001G453900.1 pacid=42788650 polypeptide=Potri.001G453900.1.p locus=Potri.001G453900 ID=Potri.001G453900.1.v4.1 annot-version=v4.1 ATGAAGACAATTCTGTCGTCCGAGACCATGGACATCCCGGACGGGGTGAAAATCAAGATCAGTGCTAGAATCATAGAAGTGGAAGGCCCAAGAGGCAAGC TGAGCAGGAACTTCAAGCATTTGAATCTTGATTTTCAGCTGATCAAAGACGAGGAAGGGAAGAGAAAGCTCAAGATCGATGCCTGGTTTGCAACAAGAAA GACCAGTGCTGCTATCAGGACTGCCCTGAGCCACGTGGAGAACTTGATTACTGGGGTTACCAAGGGGTACAGATACAAGATGAGGTTTGTGTATGCTCAC TTTCCCATCAACGCTTCCATCACTAACAGCAACACTGCTATCGAGATCCGGAACTTTCTCGGCGAGAAGAAGGTTAGGAAGGTTGATATGCTTGACGGGG TCAGTATTCTCCGATCTGAAAAGGTGAAGGATGAGCTCGTCCTAGATGGGAATGATATTGAGCTTGTTTCACGGTCGGCAGCTTTGATCAACCAGAAATG TCATGTCAAGAACAAGGATATCCGAAAATTTCTTGATGGTATCTACGTGAGTGAGAAGGGCACTGTGGTTGAGGAAGAATGA
AA sequence Show only first row Show all	>Potri.001G453900.1 pacid=42788650 polypeptide=Potri.001G453900.1.p locus=Potri.001G453900 ID=Potri.001G453900.1.v4.1 annot-version=v4.1 MKTILSSETMDIPDGVKIKISARIIEVEGPRGKLSRNFKHLNLDFQLIKDEEGKRKLKIDAWFATRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAH FPINASITNSNTAIEIRNFLGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTVVEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G453900 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	1.00	0.9794
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454101 [exp]	1.41	0.9713
AT1G27400			Ribosomal protein L22p/L17e fa...		Potri.012G096600 [exp]	1.73	0.9664	Pt-RPL17.1
AT5G60390			GTP binding Elongation factor ...		Potri.008G042500 [exp]	2.82	0.9649	ADR12.1
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.014G004100 [exp]	3.16	0.9626
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.014G057300 [exp]	4.00	0.9542	Pt-RPL15.5
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	5.91	0.9568	Pt-RPL4.2
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Potri.008G110100 [exp]	6.24	0.9361
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	7.81	0.9079
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.013G116800 [exp]	10.09	0.9118

Compare expression of checked genes

Potri.001G453900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.