Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38120 1032 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008299 [exp] 1333 / 0 AT4G38120 995 / 0.0 ARM repeat superfamily protein (.1.2) Lus10033267 [exp] 709 / 0 AT4G38120 552 / 0.0 ARM repeat superfamily protein (.1.2) Lus10033266 [exp] 573 / 0 AT4G38120 419 / 6e-134 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13251 [poplar] [flax] DUF4042 Domain of unknown function (DUF4042)
Representative CDS sequence Show only first row Show all	>Potri.001G454200.1 pacid=42789059 polypeptide=Potri.001G454200.1.p locus=Potri.001G454200 ID=Potri.001G454200.1.v4.1 annot-version=v4.1 ATGGCGACACCATCGTCGGCGCCGCCGCCGCAACCGCCGATAATCCGAACCTGGAGAACAGCATTTCTCACTCTAAGAGACGAAACCCTAACAACTCGAA GTCCAAAATCAGAATCAAAATCACTTCCACAACTCCTTCACGATTTAGTCTTCTCCTCTCCCACTCTTCTCCCCGCCGCCTCCGATCTCCCTTCTCACGA AATTACCTCTGATTTGATATTTTTACTGGAATTGGTGGCAAATTCATCACAAGATTTCACTTCAGTGTACCCTCACATTTCACATTTGGTTTATGATGTA TGCCAAAGGCAACGCGTTTCGCTGCAATTAAATTCTAATTCATGGAGTGTTGCACTTGATTCGTATGCGAAAATGCTGCAATTCTTTTTCGGAAAAGCTG GTACTGCTAATGTTAGTCTTGCTGTCGAATGTATAGAGACTGTAAGGTATTTTGTGAGTGAATATCAGCAAAAATGTTTGCTATCGGATAATGTTCAGTT AGTGAAATTCCTTCTCCGAATTGTTGACTGCTCTCATGCACAGTTAGTTAGCTCGTCGTACAGTAGTGGGAACCAAAGGTCTGCTGGGGCTACTGGAAAG GGAGTGTCTAAGTATAGTAGTTTATGGGAGGTTTATACTGTTATGTTTACTATGCTTGGTGAAGTGTTTGAAAAAGTGGGGTCTTCTCTTTCTGCTGATG TTTGGCAATCTACGATTGAGGTGCTTAGGAAAGTGATGGATGCCTTAGCAATCAACAACTCGCTTTCTGAAGATATTGTTATGTCCAGGTTTTATTCTTC TCTTCTTCATTGTCTACATCTGGTTCTTGTGGATCCTAAAGGTTCTCTTCATGATCATGTTTCTGGTTTTGTCGCAACATTACGATTGTTCTTGATTTAT GGCATTAACAGTAGACAACAGTTTACAGCCTCACCGACTGTTAACAAGGAGAAGGAACTTAGTTTAGCGAGTCTTAAGTTGAATTCTAAAGAACCTATAC GAAAAGATAATACTCCATATAGGCCTCCACACTTGCGCAAAAAAGATAGCGTGTATATGAAACAGCCCAAAGCTCAGGATTCTTTGTGTTTATCTGATCA TGAATCTTGTGCAACCGATTTCATGTCATCAGATTCAGATTGCAGTGATAGTGATGTATCAGGGAAAGATACTGATGGTATTCAAAGCTCAAAGGTTCGA GTTGCTGCCATTGAATGCATACAGGATCTTTGTCAAGCTGATCCCAAGTCATTTACTGCCCAATGGACAATGCTTTTGCCTACCAATGATGTACTGCAAC AGAGGAAGTTTGAAGCAACTCTAATGACGTGTTTGCTATTTGACCCTTATTTAAAGGTTCGGATTGCATCTGCGTCGACCGTGGTAGTTATGCTGGATGG GCCTTCATCTGTTTTTCTGCAGGTGGCAGAGTACAAAGAATCTACTAAATGGGGATCTTTTATGGCCTTATCAAGTTCCCTTGGACGGATACTGATGCAA CTTCACACTGGTATTCTGCACTTAATCCAGCGTGAAACTCATAGTCGACTACTAGCATCCGTGTTCAAGATTCTAATGCTTCTTATATCATCTACACCAT ATTCTAGAATGCCCAAAGAGTTGTTACCTAGAGCAATTGCTTCTCTCTTGGAAAAGGCTGAGAATGGGTTCCCTTTCAAAAGCAATCAAACTGGCCTGCT GGCTAGCACTATTAGCTGCTTGACTGCAGCTTTTTCAACCTCACCATCATCACCACAGGTCAAACAAATGCTTTTAGAAGAAATTTCCACAGGTGCAGTT GAGGCTGAGAAGAGGTCTGGTGTTATTTTCACTATATTTAGGCTTTCTGAGCAATTAACCAATCCAACAATATGCTTCGAGACCCTCCAGACTCTTAGAG CTGTGCTACACAGTTACCCCAACATAGCATCTGCTTGTTGGGAACGTGTTTCCATCATAGTCTCCAAAATTTCGAGGGCAGCTTCTCTAGAAGCTCCTAT GAGGACGTGGAAGGGACATGCAGGAGATACTGTTGGCTTTATCGGGGAAAAGATTGTAACAGCTGCTATTAAGGTTTTGGATGAATGTCTTCGTGCAATA TCTGGATTTAAAGGAACTGAAGATATTTTAGATGATAAGTTACTGGATACTCCATTTACATCTGATTTTGTGAGGATGAAGAAAGTATCATCAGCGCCAT CATATGAACCTGAGAGTGCAGAAGATACCAAAGATGAACAAAAAACATATCATTCAGGAAGCGAACATTGGTCTGAGGCAATAGAGAAGCATATACCCAT GACATTACGGCATACTTCTCCCATGGTAAGAACTGCAGCAATAACTTGTTTCGCGGGTATTACCTCTTCTGTATTCTTCTCCCTTGCAAAGGAGAAACAG GAGTTCATTGTTTCTTCTTTGATCAATGCTGTTAATGATGGGGTTCCTTCAGTCAGGTCAGCTGCTTGTCGAGGCGTTGGTGTAATCTCTTGTTTTCTGC AAGTTCCACTGAGTGCAGAGATCCTTGACAAGTTTATCCATGCTGTTGAGATCAACACTCGTGATCCCTTGGTCTCGGTGAGAATAACTGCCTCATGGGC TTTGGCAAACATATGTGATTCCCTGCGTCACTGTATTGATGAATTTCCCTTGAAAAAGTACACAGGCTCAAACACAAACCCTCAATTAGTGGCATTTTTA ACTGAGTGTGCTTTGCGGCTAACAGATGATGGAGACAAGATCAAATCAAATGCTGTAAGAGCTCTTGGAAATCTTTCTAGATTTGTCAAGTGTACAAATT CTTCTGGTGTGCATGATAAGCCTGTGGGTTATCTGGACTCATCAAGCGACAAAATTGAGATGTTATCAGAGAGGAGTAGTCTTCAACATGCATCAAATTA TCGCTATCCAACTTCATTGGGAGACTCACATTTGCTGGAGAAAATGGTTCAAGCATTCCTTTCTTGTGTTACAACTGGGAATGTTAAGGTCCAGTGGAAT GTTTGTCATGCGTTGAGTAACCTCTTTTTAAACGAGACACTAAGACTGCAAGATATGGATTGGGCTCCATCTGTTTTTAGTGTTCTCCTGCTACTACTAC GGGATTCTTCTAACTTTAAAATCAGGATACAAGCTGCTGCTGCTCTGGCTGTCCCAGCCTCAGCATTTGATTATGGGAACTCCTTTTCGGATGTTGTGCA AGGACTGGAACATATTCTTGAGAATCTAGGTTCAGACCAGATTTCAGCACCATCAAATTTTAAATATAGGGTTGCCCTTGAGAAGCAGGTAACAGCAACC ATGTTGCATGTCCTTGGTCTCGCTTCAAGCACTGATCACCAACCTCTGAAAGATTTCCTTGTGAAAAAAGCCCCATTTTTGGAGGAGTGGTTTAAGGGCC TGTGCTCCTCATTATGGGAGACAGGCTCACAGTCTGAGGCTGGAAGCTCCATTGGGGACCAAAAGAAACATATGATATCCAAGGCAATACAATCCCTAAT CGAAGTGTACGAGAGCAGGAATCACCAATTGGTCGCGCAGAAATTCGAGGAGTTGAGCAACAGCATACAGTTGTAA
AA sequence Show only first row Show all	>Potri.001G454200.1 pacid=42789059 polypeptide=Potri.001G454200.1.p locus=Potri.001G454200 ID=Potri.001G454200.1.v4.1 annot-version=v4.1 MATPSSAPPPQPPIIRTWRTAFLTLRDETLTTRSPKSESKSLPQLLHDLVFSSPTLLPAASDLPSHEITSDLIFLLELVANSSQDFTSVYPHISHLVYDV CQRQRVSLQLNSNSWSVALDSYAKMLQFFFGKAGTANVSLAVECIETVRYFVSEYQQKCLLSDNVQLVKFLLRIVDCSHAQLVSSSYSSGNQRSAGATGK GVSKYSSLWEVYTVMFTMLGEVFEKVGSSLSADVWQSTIEVLRKVMDALAINNSLSEDIVMSRFYSSLLHCLHLVLVDPKGSLHDHVSGFVATLRLFLIY GINSRQQFTASPTVNKEKELSLASLKLNSKEPIRKDNTPYRPPHLRKKDSVYMKQPKAQDSLCLSDHESCATDFMSSDSDCSDSDVSGKDTDGIQSSKVR VAAIECIQDLCQADPKSFTAQWTMLLPTNDVLQQRKFEATLMTCLLFDPYLKVRIASASTVVVMLDGPSSVFLQVAEYKESTKWGSFMALSSSLGRILMQ LHTGILHLIQRETHSRLLASVFKILMLLISSTPYSRMPKELLPRAIASLLEKAENGFPFKSNQTGLLASTISCLTAAFSTSPSSPQVKQMLLEEISTGAV EAEKRSGVIFTIFRLSEQLTNPTICFETLQTLRAVLHSYPNIASACWERVSIIVSKISRAASLEAPMRTWKGHAGDTVGFIGEKIVTAAIKVLDECLRAI SGFKGTEDILDDKLLDTPFTSDFVRMKKVSSAPSYEPESAEDTKDEQKTYHSGSEHWSEAIEKHIPMTLRHTSPMVRTAAITCFAGITSSVFFSLAKEKQ EFIVSSLINAVNDGVPSVRSAACRGVGVISCFLQVPLSAEILDKFIHAVEINTRDPLVSVRITASWALANICDSLRHCIDEFPLKKYTGSNTNPQLVAFL TECALRLTDDGDKIKSNAVRALGNLSRFVKCTNSSGVHDKPVGYLDSSSDKIEMLSERSSLQHASNYRYPTSLGDSHLLEKMVQAFLSCVTTGNVKVQWN VCHALSNLFLNETLRLQDMDWAPSVFSVLLLLLRDSSNFKIRIQAAAALAVPASAFDYGNSFSDVVQGLEHILENLGSDQISAPSNFKYRVALEKQVTAT MLHVLGLASSTDHQPLKDFLVKKAPFLEEWFKGLCSSLWETGSQSEAGSSIGDQKKHMISKAIQSLIEVYESRNHQLVAQKFEELSNSIQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	0	1
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	1.00	0.9206
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.003G098700 [exp]	1.41	0.8855
AT3G51050			FG-GAP repeat-containing prote...		Potri.005G118300 [exp]	3.46	0.8147
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	5.74	0.8088
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.001G185050 [exp]	8.66	0.7894
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Potri.005G099800 [exp]	10.09	0.7850
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	11.48	0.8083
AT5G54920			unknown protein		Potri.001G423200 [exp]	13.30	0.7663
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	15.16	0.7748
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	15.49	0.8187

Compare expression of checked genes

Potri.001G454200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.