Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33170 962 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 960 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 768 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 754 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 726 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 696 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 616 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 538 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 514 / 1e-176 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 471 / 1e-159 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147600 [exp] 1187 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 804 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 798 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 785 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 771 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 736 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 733 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 732 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 724 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017357 [exp] 1015 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 1014 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 1004 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 759 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 728 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 727 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 720 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 719 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 706 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 704 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G454300.2 pacid=42789319 polypeptide=Potri.001G454300.2.p locus=Potri.001G454300 ID=Potri.001G454300.2.v4.1 annot-version=v4.1 ATGGCTAATGGATCACCAAAGCACCACCATCAGCTAGAAGCGAAGAGAAAGCGCCTAACTTGGATTGTTGGGGTCAGTGGCCTTTGCGTTTTGTTTTATG TTTTGGGAGCTTGGCAGCATTCCGCCCCACTCACAAATCTGACTCAGTCCATCACTAAAGCAGACTGTGATGTTTCAAATCGTGCCGCGGTTAGTTCTAA TCCATCAACATCTTCATCATCAGTTGCCTTGGATTTTGATAGCCATCATCAGAGTCAGATCAACAATACTACTTCAGTTAATGAGTTTCCACCATGCGAC ATGTCCTTTAGTGAGTACGCTCCTTGCCAAGATACTCAAAGGGGAAGGAAATTTGATAGGAACATGTTGAAATATAGAGAGAGGCATTGCCCAACAAAGG ATGAATTACTCCTTTGCTTGATACCTGCTCCGCCTAAATACAAGACCCCTTTTAAATGGCCTCAAAGCCGTGATTATGCCTGGTATGATAATATTCCCCA TAAAGAACTTAGTATTGAAAAGGCTGTGCAGAATTGGATTCAAGTTGAGGGTGACCGATTTAGATTCCCTGGTGGAGGCACCATGTTCCCGCGTGGAGCT GATGCTTATATTGATGACATTAATGAGCTCATTCCTCTTACTGATGGAAGCATCAGAACTGCAATTGACACAGGCTGCGGTGTTGCGAGTTGGGGTGCGT ACCTGTTGAAGAGGGACATTATATCAATGTCTTTTGCACCAAGGGATACACATGAAGCACAGGTCTGGTTTGCGTTGGAGAGGGGAGTTCCTGGTATGAT TGGTATCATGGCTTCGCAAAGGCTTCCTTACCCAGCAAGGGCTTTTGACATGGCTCATTGTTCCCGTTGCTTGATACCGTGGCATAAATATGATGGTATG TATCTAATTGAAGTGGATAGAGTTTTAAGGCCTGGTGGCTACTGGATTCTATCTGGTCCTCCTATTCACTGGAAGAAACACTGGAAAGGTTGGGAAAGAA CCCAAGAAGACTTGAAGCAAGAGCAGGATGCTATTGAGGATGTAGCCAAGCGCCTGTGCTGGAAGAAAGTGGTTGAAAAGGATGATCTTTCAGTCTGGCA AAAGCCCCTGAACCACATTGATTGTATTGCAAGCAGGAAGACCTATAAAACACCACATATATGCAAATCAGACAATCCAGATGCTGGCTGGTACAAAGAA ATGGAAGTTTGCATAACTCCATTACCAGAAGTAAGCAGCTCGGATGAAGTAGCTGGTGGTGCCGTGGAGAAATGGCCAGCACGTGCATTCGCAATCCCTC CAAGAATTCGCAGTGGTTCAATACCAGGAATCACTGCTGAGAAATTCAAGGAGGACAATAATCTGTGGAAGGATAGAGTGACAAATTATAAGCATATCAT TAGTCCTCTCACCAAAGGCAGATACAGGAACATAATGGACATGAATGCACAGCTTGGAGGATTTGCTGCAGCCTTGGCAAAATATCCAGTGTGGGTTATG AATGTGGTTCCTGCCAATTCAAATCCAGACACACTTGGTGTGATCTATGAACGAGGTTTCATTGGAACATATCAAGATTGGTGTGAGGCAGTCTCAACAT ATCCAAGAACATACGATCTCATCCATGCTGGTGGGGTGTTTAGTATATATCAGGACAGGTGTGACATAACCCACATTCTGCTGGAGATGGATAGAATTCT GAGGCCAGAAGGGACAGTGATATTCAGGGATACAGTAGAGGTTCTTGTGAAGATTCAGACCATAACAAATGGCATGAGGTGGAAGAGCCAAATTATGGAC CATGAAAGTGGACCTTTTAACCCAGAGAAAATTCTTGTTGCTGTCAAAACTTACTGGACTGGTGAAAAGAAGCAAAAACAAAAGGAGTAG
AA sequence Show only first row Show all	>Potri.001G454300.2 pacid=42789319 polypeptide=Potri.001G454300.2.p locus=Potri.001G454300 ID=Potri.001G454300.2.v4.1 annot-version=v4.1 MANGSPKHHHQLEAKRKRLTWIVGVSGLCVLFYVLGAWQHSAPLTNLTQSITKADCDVSNRAAVSSNPSTSSSSVALDFDSHHQSQINNTTSVNEFPPCD MSFSEYAPCQDTQRGRKFDRNMLKYRERHCPTKDELLLCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAVQNWIQVEGDRFRFPGGGTMFPRGA DAYIDDINELIPLTDGSIRTAIDTGCGVASWGAYLLKRDIISMSFAPRDTHEAQVWFALERGVPGMIGIMASQRLPYPARAFDMAHCSRCLIPWHKYDGM YLIEVDRVLRPGGYWILSGPPIHWKKHWKGWERTQEDLKQEQDAIEDVAKRLCWKKVVEKDDLSVWQKPLNHIDCIASRKTYKTPHICKSDNPDAGWYKE MEVCITPLPEVSSSDEVAGGAVEKWPARAFAIPPRIRSGSIPGITAEKFKEDNNLWKDRVTNYKHIISPLTKGRYRNIMDMNAQLGGFAAALAKYPVWVM NVVPANSNPDTLGVIYERGFIGTYQDWCEAVSTYPRTYDLIHAGGVFSIYQDRCDITHILLEMDRILRPEGTVIFRDTVEVLVKIQTITNGMRWKSQIMD HESGPFNPEKILVAVKTYWTGEKKQKQKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33170			S-adenosyl-L-methionine-depend...		Potri.001G454300 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201900 [exp]	2.23	0.7774
AT5G57970			DNA glycosylase superfamily pr...		Potri.006G184700 [exp]	10.04	0.6880
AT5G05800			unknown protein		Potri.006G116400 [exp]	11.83	0.7019
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G055700 [exp]	22.18	0.7851
AT1G65295			unknown protein		Potri.019G053100 [exp]	22.44	0.7737
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	23.32	0.7674
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	24.00	0.7864	ATCSLA02.1
AT5G01090			Concanavalin A-like lectin fam...		Potri.016G107200 [exp]	37.82	0.7102
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	38.06	0.7393
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	39.59	0.7303

Compare expression of checked genes

Potri.001G454300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.