Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33230 526 / 0 TMPIT-like protein (.1) AT4G10430 518 / 0 TMPIT-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 644 / 0 AT1G33230 486 / 4e-173 TMPIT-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010151 [exp] 536 / 0 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10008294 [exp] 503 / 9e-180 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10017356 [exp] 462 / 5e-164 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3) Lus10033263 [exp] 414 / 1e-144 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 345 / 9e-119 AT1G33230 327 / 3e-112 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [poplar] [flax] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G454400.4 pacid=42792512 polypeptide=Potri.001G454400.4.p locus=Potri.001G454400 ID=Potri.001G454400.4.v4.1 annot-version=v4.1 ATGGCGGCTGCGGCGGAGGACACGGTGGAGGAAGAGGTAGGTCGAGTGGTGGAACAAGCGAAGGAGTTGCAAGAAACCGCTGCTTCTTTAATTGCTAAAT CTACACACGACGAACAATCTGTTCGCCAAAAAGCTCTCTCTCTTGAGTCTTCTATTCGGCGTTGCAGTTCTCTCCTTGACCGCAGCAATCACCTCGCTCC TAAATTAGCTGCCAAGCTTGAAGAAGATTTACAGAAAGCAAGATGTATTATAGCTGATGGAGATGCTTCTTCTTTTCTTCCTTCAAAGCCTCAAGGGCGT TTTCTAAAAATGTTTTTGGGACCGATTAATGTGCGTGCTTCTCGTAAAGATGTGCAGTTCAAGGTTAAAGAGGAGTATAACAGTTACAGGGATAGGACTG CACTTTTGTTTCTATTTTTCCCATCGGTTTTGCTTTGTTTGAGGTCTTGGGTCTGGAATGGGTGCTTGCCTACGTTTCCAGTTCAATTGTATCAGGCGTG GCTATTGTTTCTCTACACTGGATTGACTTTGAGAGAGAATATATTGAGAGCCAATGGAAGCGATATTCGTTCATGGTGGATCAACCATCACTATTGTGCT ATGATTATGGCCGTAGTTAGTCTCACATGGGAGATTAAAGGTCAACCAAATTGTGCTCAGAAGCAGAGAGGGGTACAATTGTTCTTGCAATGGGCTATGA TGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAGAGACTCTATACCCGTATTGCTTTGGGAAAGGCTAAGCGAATGGATGTTGTGTGGGG AGAAACAGCTGGTGTGGATGGGCAGTTGTGGCTGTTGTGTCCTATACTCTTCATTCTGCAGGGTTTTGAGGCATATGTTGGACTACAGCTGCTCAGGACT GCATACAAGGGGGTCACCTCCGAGTGGCAGGTTATTTTCTGTGGTGTCCTTCTGGTCTTTATGGCAGTCGGGAACTTCTTAAACACAGTAGAGATACTAA TGGTGAAGTCAAGGTTTAAGGCAAAAATGAAAAGTAAGAGCAAGCAGGAAATGGATTGA
AA sequence Show only first row Show all	>Potri.001G454400.4 pacid=42792512 polypeptide=Potri.001G454400.4.p locus=Potri.001G454400 ID=Potri.001G454400.4.v4.1 annot-version=v4.1 MAAAAEDTVEEEVGRVVEQAKELQETAASLIAKSTHDEQSVRQKALSLESSIRRCSSLLDRSNHLAPKLAAKLEEDLQKARCIIADGDASSFLPSKPQGR FLKMFLGPINVRASRKDVQFKVKEEYNSYRDRTALLFLFFPSVLLCLRSWVWNGCLPTFPVQLYQAWLLFLYTGLTLRENILRANGSDIRSWWINHHYCA MIMAVVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLQLLRT AYKGVTSEWQVIFCGVLLVFMAVGNFLNTVEILMVKSRFKAKMKSKSKQEMD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33230			TMPIT-like protein (.1)		Potri.001G454400 [exp]	0	1
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	3.87	0.7232
AT3G55920			Cyclophilin-like peptidyl-prol...		Potri.010G189000 [exp]	9.27	0.7436
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.002G030800 [exp]	11.13	0.6659
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	14.21	0.7422
AT1G64200		VHA-E3	vacuolar H+-ATPase subunit E i...		Potri.016G139800 [exp]	15.49	0.7410
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	16.43	0.7150
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	17.34	0.7112
AT5G67140			F-box/RNI-like superfamily pro...		Potri.005G140000 [exp]	22.09	0.7023
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	26.15	0.6841
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.010G045500 [exp]	31.62	0.6836

Compare expression of checked genes

Potri.001G454400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.