Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33240 186 / 1e-49 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76880 172 / 2e-45 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 163 / 2e-42 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 136 / 2e-33 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 130 / 6e-32 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 121 / 2e-28 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 91 / 4e-19 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 62 / 6e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 57 / 1e-08 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 56 / 3e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147400 [exp] 796 / 0 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068600 [exp] 166 / 2e-43 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 164 / 1e-42 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G191900 [exp] 160 / 2e-42 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 160 / 3e-41 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 157 / 7e-41 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 155 / 4e-40 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 137 / 2e-35 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.010G235000 [exp] 140 / 8e-35 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029778 [exp] 171 / 2e-44 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 164 / 2e-43 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 165 / 1e-42 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 164 / 2e-42 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 161 / 9e-42 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 146 / 4e-37 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 145 / 1e-36 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10027718 [exp] 142 / 4e-36 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 139 / 7e-35 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10014375 [exp] 137 / 3e-34 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G454500.1 pacid=42788550 polypeptide=Potri.001G454500.1.p locus=Potri.001G454500 ID=Potri.001G454500.1.v4.1 annot-version=v4.1 ATGCAACAAGGAGGTGGAGAAAGAGGGTCATCACAGTCACAATATGCAGTGCCACAGCAACAGCAACAACAAGGTGATATGCCTTTACCTCCTTCTACAT CTGCTGCACTGGCAACCCACATGCAGCAGCAGCAACAAGTCGTAGAAGAAGCATCACCCATTAGCAGCAGACCTCCTGCCACTGCTGCCACAACAAGTGG TGGTGGTGTTATGAATTTGGATGAGTTTATGAGACTTTCAGGTGGTGGTGGTGGTGCAGAAGAAGATATTGCTGGAGAAGATGCAGATCGAACAGGAGGT ATTGCTAGTGGCAATAGGTGGCCAAGGCAAGAAACACTTGCCCTTTTGCAAATTAGGTCTGAAATGGATGCTGCTTTTCGTGATGCCACCTTAAAGGGTC CTCTATGGGAGGATGTTTCAAGGAAGCTAGCAGAGATGGGATACAAGAGAAGTGCCAAGAAATGCAAAGAAAAGTTTGAGAACGTGCACAAGTATTACAA AAGAACAAAGGAGGGTAGAGCTGGTCGTCAAGATGGGAAAAGCTATAGGTTTTTTAGCCAGCTTGAAGCTTTGCAGAATACTGGTGGTGGTGGTGGTGTT TCTTCTAGCATTAGCAATGTGTCTGGTGTTGCTCCTCAGCTGATTGGCACTGCAACAACAAGCAGCCTAGATGTTGCTCCTGTTTCTGTTGGGATTCCTA TGCCTATAAGAACTCCTCCACCTTCTTCTCAGGTGCCTCAACCAGCTTCAAATATTGGTTCCATGTTTCCTCCTGATTTGGGGGCAACAGTGGCGCGTGC AGCTGCTGCAGGTGCCCCGGTTCGAATCAGCTTCTCGTCGAATGAGTCTTCTTCCTCTCAAAGTTCTGAAGATGATGACGACGACGAGGATGAAGGTATA TTAGGAGGACAAACATCAGCCATGGGTGCTGGTACAAGTCGAAAACGTAAAAGGGCATCATTATCATCGTCGAAAGGAGAAACACATCGTATGATGGAGT TTTTTGAGGGGCTAATGAAGCAGGTTATGCAAAAGCAAGAGGCAATGCAACATAGATTTTTGGAGGCGATTGAGAAGAGGGAACAAGATAGGATGATAAG GGATGAAGCTTGGAAAAGGCAAGAAATGGCTAGATTGAGTCGTGAACATGAGATTATGGCTCAAGAACGGTCTATTTCGGCTAGTCGAGATGCAGCTATT GTTGCCTTTCTACAGAAAATTACTGGCCAAACTATTCATTTGCCTACGCCTGTATCAATTGCTCCTCTAGTTTCACAACCACAACCACCACCACCAACAC AGCCACAACAGGTTCAAATAGCGCCATTGGTCACTGTCTCAACACAACCACCACTGCAACCGCAACCCATGCCACTGTCACAAGTAACACCACAACAAAA TAAGCAACTACCCCAACAGCAACATCACCAACAACAGCAGCACCAACAAGTTCATCATCAACACCAACCACCATCCATTTCTTCAGAAATAGTAATGGCG GTCCCGGAACAACAAATAGCACCACTGGAACTTGGAAGTGGTGGGAGCGAACCAGCATCATCAAGATGGCCAAAGCCAGAAGTTCTTGCACTTATAAAGT TGAGAAGTGGGCTTGAAACTAGATACCAAGAAGCTGGGCCTAAGGGACCACTTTGGGAAGAAATCTCAGCAGGGATGCTAAGGTTGGGCTATAAAAGAAG TTCCAAAAGATGCAAAGAGAAATGGGAGAATATCAATAAGTATTTCAAGAAAGTTAAAGAGAGTAACAAGAAACGGACAGAAGATGCCAAGACTTGCCCT TATTTTCATGAACTTGATGCCCTTTATAGGAAAAAGATACTTGGAAGCAGTAGTGGTGGTGCGGGAAGCACCTCCACTAGTGGCTTTGACAGCCAAATTA ATAGGCCACAAAAACAGCAGCACCAGCATCAAGAGAGCTTAGAATTGGATCCAATGCCACCTCCAATGCAGCAGACAGTGCCGCAACAGACACAAGCCAC AGAATCACAAAACAAAAATGGGGCTAGTGTTGATGTTCAAGCAAGCAACACAGTTTTAGCAGGAAGCCCCTTTGGAGAAGGAAATGGAGGAGCAGAAAAG AAGCCAGAAGACATCGTGAAGGAGCTGATGAAACAGCAGGGGACTCAACAACAACAACAGTTAATGGTGGATGACTATGATAAGATGGAGGAAGGTGACA GCGAAAACGTAAATGAAGATGAATATGATGAGGAAGACGACGGCGACGAAGATGAAGAAGAAGATGAGGCATTGCAAGAGGAGAGGAAAATGGCATACAA GATAGAGTTTCAAAGGCAGAACACAAGTAATGCCACCAATGGAGGAGGGTCTGGGGCACCCTCCTTTTTGGCCATGGTTCAATAG
AA sequence Show only first row Show all	>Potri.001G454500.1 pacid=42788550 polypeptide=Potri.001G454500.1.p locus=Potri.001G454500 ID=Potri.001G454500.1.v4.1 annot-version=v4.1 MQQGGGERGSSQSQYAVPQQQQQQGDMPLPPSTSAALATHMQQQQQVVEEASPISSRPPATAATTSGGGVMNLDEFMRLSGGGGGAEEDIAGEDADRTGG IASGNRWPRQETLALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFSQLEALQNTGGGGGV SSSISNVSGVAPQLIGTATTSSLDVAPVSVGIPMPIRTPPPSSQVPQPASNIGSMFPPDLGATVARAAAAGAPVRISFSSNESSSSQSSEDDDDDEDEGI LGGQTSAMGAGTSRKRKRASLSSSKGETHRMMEFFEGLMKQVMQKQEAMQHRFLEAIEKREQDRMIRDEAWKRQEMARLSREHEIMAQERSISASRDAAI VAFLQKITGQTIHLPTPVSIAPLVSQPQPPPPTQPQQVQIAPLVTVSTQPPLQPQPMPLSQVTPQQNKQLPQQQHHQQQQHQQVHHQHQPPSISSEIVMA VPEQQIAPLELGSGGSEPASSRWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKRTEDAKTCP YFHELDALYRKKILGSSSGGAGSTSTSGFDSQINRPQKQQHQHQESLELDPMPPPMQQTVPQQTQATESQNKNGASVDVQASNTVLAGSPFGEGNGGAEK KPEDIVKELMKQQGTQQQQQLMVDDYDKMEEGDSENVNEDEYDEEDDGDEDEEEDEALQEERKMAYKIEFQRQNTSNATNGGGSGAPSFLAMVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	0	1
AT5G53060			RNA-binding KH domain-containi...		Potri.015G011100 [exp]	1.00	0.8650
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	7.48	0.8392
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	7.93	0.8396
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	9.00	0.8139
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	9.16	0.8493	COI1.2
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.014G051200 [exp]	13.22	0.7834
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	14.49	0.8178
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	15.49	0.7835
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	23.36	0.7886	SEU.1
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	26.58	0.8151

Compare expression of checked genes

Potri.001G454500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.