Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33260 323 / 4e-108 Protein kinase superfamily protein (.1.2) AT4G10390 320 / 7e-107 Protein kinase superfamily protein (.1) AT1G51890 202 / 4e-57 Leucine-rich repeat protein kinase family protein (.1.2) AT1G51880 198 / 1e-55 RHS6 root hair specific 6 (.1) AT1G51820 194 / 3e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G51850 194 / 4e-54 Leucine-rich repeat protein kinase family protein (.1) AT2G28960 193 / 8e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 192 / 1e-53 Leucine-rich repeat protein kinase family protein (.1.2) AT2G04300 192 / 2e-53 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 192 / 2e-53 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147100 [exp] 621 / 0 AT4G10390 325 / 5e-110 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 186 / 4e-52 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 185 / 1e-51 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 174 / 2e-49 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.001G048500 [exp] 174 / 3e-49 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 169 / 7e-48 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G094200 [exp] 171 / 8e-48 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G241600 [exp] 169 / 1e-47 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.004G231300 [exp] 174 / 3e-47 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019741 [exp] 330 / 2e-110 AT1G33260 274 / 6e-90 Protein kinase superfamily protein (.1.2) Lus10016382 [exp] 327 / 4e-109 AT1G33260 280 / 2e-92 Protein kinase superfamily protein (.1.2) Lus10013656 [exp] 317 / 2e-105 AT4G10390 282 / 2e-93 Protein kinase superfamily protein (.1) Lus10014071 [exp] 182 / 2e-50 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 178 / 5e-49 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 169 / 7e-48 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001996 [exp] 175 / 2e-47 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 174 / 2e-47 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10038087 [exp] 167 / 9e-47 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10036499 [exp] 166 / 1e-46 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G454800.1 pacid=42791110 polypeptide=Potri.001G454800.1.p locus=Potri.001G454800 ID=Potri.001G454800.1.v4.1 annot-version=v4.1 ATGAGACCTGTTCCAACCAAAGATCTATTTGTCTGCAGGTTTTGGTGCTGTTGGCCCATCCCTTCAAGTATTTTCTTATTGTCTCTTCTCACCTTCTCCG TGGCTTCCCTTCAGCAACCCACCACTGCCGCCGCCCCCAGTACTACTATCCATCCACCGACAGCTATTCCTTTAAAACACCACCACTCTCTCTTTGACCA TAGATTCGCCATACCTCTCACTGCTTCTCTACTGCTTCTTCTCTTGCTTGTCATCATCATGGGCTGCTTTCTCGGACTCAGATTCAGACACAAAAGACTT GCCAAGAAGGTTGATGCTGCTTCAAATGGGAGTAATGATCTTGATCCTAAAAAGGAAAAGGATTCTGATCATGGTACTCATGGTTGTGTAAGGAAATACA ACTGGAGTGAGATAGAGAAACTGTCAATGAATTTCTCTCAGATTGTTGGATCAGGAGGGTTTAGCACGGTGTACTTGGGCCACTTGCCTGGTTCCAATCT TGGGGCGATCAAGATTCACTGCCCGAGTGACTATCTCAATAGAGTCTTCAAGCAAGAACTAGACATACTACTTCAACTCCAACATGACAACATTGTCAAG CTCCTAGGATACTGTGATGTTCAAGATGAAGGTGCTTTGGTATTTGAGTATGTTTCCAATGGAACCTTGCAAGATAAACTCCATGGTGGGGAAAGAGAAA TTAAGAAATCATCAAGTAGTTCAGTGATTTCATGGAGAAATAGAATGGAAATAGCCTACCAACTTGCTCAAGCTCTTGAATATCTACATGAAAAATGTCC TCTCCAAATCGTACACGGTGACATCAAGCCTTCAAACATTTTACTCGACGAGCAACTGAATTGCAAGCTATGTGATTTTGGGTTTGCAAAGATGGGATTT TCTTCCACGATAATGACTTCCAACAATAGGAAGCAAGTGATGATGGGCTCTCCGGGTTACACAGATCCACACTACCTCAGAACAGGAATAGCATCAAAAA AGAACGATGTGTACAGCTATGGAGTCATAATTTTGGAACTTGTGACAGGAATGGAGGCGTTTTGCGAGGAAAGAGAGCAAGGCCAGCTACTGTCATCAAT AATGGGACCCATTTTGAAGGACATAATTGCCAGTGATAATGAATGCAAAGCGATGAAGGAGGCAGAAATGGTGGATCCAAGATTGGGAGAAGACTTTGAA GTCAAGGAAGTCAAGGTTATGCTTTCCCTCGCAGCTCTTTGCCTTGGACAGTCTCCAAGTCTTAGGCCATCTGCAACACAAATCTTGCATACTATCAAGG AGAATATAGCCTCCATTTCCTTCATCTCCACACAGAAAAAAGATTTGTCAAATTGA
AA sequence Show only first row Show all	>Potri.001G454800.1 pacid=42791110 polypeptide=Potri.001G454800.1.p locus=Potri.001G454800 ID=Potri.001G454800.1.v4.1 annot-version=v4.1 MRPVPTKDLFVCRFWCCWPIPSSIFLLSLLTFSVASLQQPTTAAAPSTTIHPPTAIPLKHHHSLFDHRFAIPLTASLLLLLLLVIIMGCFLGLRFRHKRL AKKVDAASNGSNDLDPKKEKDSDHGTHGCVRKYNWSEIEKLSMNFSQIVGSGGFSTVYLGHLPGSNLGAIKIHCPSDYLNRVFKQELDILLQLQHDNIVK LLGYCDVQDEGALVFEYVSNGTLQDKLHGGEREIKKSSSSSVISWRNRMEIAYQLAQALEYLHEKCPLQIVHGDIKPSNILLDEQLNCKLCDFGFAKMGF SSTIMTSNNRKQVMMGSPGYTDPHYLRTGIASKKNDVYSYGVIILELVTGMEAFCEEREQGQLLSSIMGPILKDIIASDNECKAMKEAEMVDPRLGEDFE VKEVKVMLSLAALCLGQSPSLRPSATQILHTIKENIASISFISTQKKDLSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33260			Protein kinase superfamily pro...		Potri.001G454800 [exp]	0	1
AT3G14205			Phosphoinositide phosphatase f...		Potri.003G071300 [exp]	7.07	0.6964
AT4G31980			unknown protein		Potri.003G206601 [exp]	8.66	0.7385
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Potri.003G133300 [exp]	13.11	0.7157	F.1
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Potri.002G164601 [exp]	32.95	0.6922
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	35.49	0.6858
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	47.59	0.6748
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	98.83	0.6147
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145538 [exp]	127.46	0.6137
					Potri.010G189401 [exp]	186.93	0.5843
AT5G20660			Zn-dependent exopeptidases sup...		Potri.008G039400 [exp]	236.69	0.5640

Compare expression of checked genes

Potri.001G454800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.