Plant FIBer expression Database

Potri.001G454900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33265 56 / 7e-10 Transmembrane proteins 14C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G147000
[exp]
175 / 2e-56 AT1G33265 58 / 9e-11 Transmembrane proteins 14C (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03647 Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence
>Potri.001G454900.1 pacid=42792758 polypeptide=Potri.001G454900.1.p locus=Potri.001G454900 ID=Potri.001G454900.1.v4.1 annot-version=v4.1
ATGTCTTGCTCCTTTTTACTGATTCCCACGAAATTCCCCACATTGAATAGTTACAGCAAACACATAAACTCAACTGCTTTGTTGGGTTTCTCTTCTTTTT
CTTGTTTGAGGAATAGAAGAAGATCCAATTCCATTGCTACTTCTTTTTCCAGAGGAAGAAGTCTTGGCTGCAAATGTCAGTTGGCAGATATTGCTCCTGT
AACCTCTGCTGCCTATGGTGTCATTCTTCTTGGCGGTGGCCTCTTTGCCTTCAGTAAATCAGGAAGCAAAGGGTCGCTCTTTGGAGGGTTGACAGGGGCT
GCTGTCATGGGAACGGCCTACTTTCTGATGCAAGCTCCAGAGACAAAAGCTATTGGTGATTCCCTCGGGTTTGGATCAGCCTTCCTATTCTCTTCTGTGT
TTGGAATACGATTGGCAGCTACCCAAAAACTGATTCCTTCTGGTCTTCTGCTAGGTCTATCTATCTGTGCACTGGCTGTGTTTATTGCAGCATATTTACA
GGATAGTCTGATTACTGACCTTGTTTAG
AA sequence
>Potri.001G454900.1 pacid=42792758 polypeptide=Potri.001G454900.1.p locus=Potri.001G454900 ID=Potri.001G454900.1.v4.1 annot-version=v4.1
MSCSFLLIPTKFPTLNSYSKHINSTALLGFSSFSCLRNRRRSNSIATSFSRGRSLGCKCQLADIAPVTSAAYGVILLGGGLFAFSKSGSKGSLFGGLTGA
AVMGTAYFLMQAPETKAIGDSLGFGSAFLFSSVFGIRLAATQKLIPSGLLLGLSICALAVFIAAYLQDSLITDLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33265 Transmembrane proteins 14C (.1... Potri.001G454900
[exp]
0 1
AT3G53140 O-methyltransferase family pro... Potri.006G120000
[exp]
4.24 0.8031 COMTL4
AT5G16710 DHAR3 dehydroascorbate reductase 1 (... Potri.017G125100
[exp]
13.41 0.8540
AT4G08280 Thioredoxin superfamily protei... Potri.002G085200
[exp]
14.07 0.8511
AT5G37360 unknown protein Potri.013G050300
[exp]
17.66 0.8133
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.002G195200
[exp]
28.07 0.8501 CLPP5.2
AT1G04940 AtTic20-I, atTI... translocon at the inner envelo... Potri.002G031800
[exp]
30.19 0.8236
AT3G60210 GroES-like family protein (.1) Potri.014G044300
[exp]
33.43 0.8078 CPN10.4
AT3G01740 Mitochondrial ribosomal protei... Potri.001G335600
[exp]
33.98 0.7825
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.012G040900
[exp]
38.18 0.8180
AT5G38260 Protein kinase superfamily pro... Potri.004G076500
[exp]
39.33 0.7050

Potri.001G454900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.