Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65930 1881 / 0 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT2G22610 305 / 9e-87 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 292 / 3e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27180 285 / 5e-82 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT1G72250 292 / 1e-81 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G54670 282 / 8e-81 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G05190 280 / 8e-80 ATK5 kinesin 5 (.1) AT5G27000 282 / 3e-79 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT4G21270 275 / 5e-78 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT2G47500 267 / 4e-74 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146700 [exp] 2355 / 0 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.001G416300 [exp] 287 / 1e-82 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G131900 [exp] 281 / 2e-80 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.002G110600 [exp] 286 / 5e-80 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 280 / 7e-80 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 275 / 4e-78 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 281 / 9e-78 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G011500 [exp] 278 / 2e-77 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.004G031600 [exp] 272 / 3e-77 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006064 [exp] 2009 / 0 AT5G65930 1877 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10009426 [exp] 1923 / 0 AT5G65930 1796 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10035954 [exp] 316 / 3e-90 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 294 / 9e-83 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 278 / 6e-77 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 277 / 7e-77 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035838 [exp] 270 / 4e-76 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 269 / 1e-75 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10029865 [exp] 270 / 1e-74 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10018384 [exp] 265 / 2e-74 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0632 [poplar] [flax] FERM_M PF00373 [poplar] [flax] FERM_M FERM central domain CL0632 [poplar] [flax] PF00784 [poplar] [flax] MyTH4 MyTH4 domain CL0072 [poplar] [flax] Ubiquitin PF09379 [poplar] [flax] FERM_N FERM N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G455300.1 pacid=42790496 polypeptide=Potri.001G455300.1.p locus=Potri.001G455300 ID=Potri.001G455300.1.v4.1 annot-version=v4.1 ATGAAACTTGATGTGCATTCATTAATGGCTCAAAGTATAAGATCAAGAAGGACTTCTTTTAACTCCACTAATGGAAATGAAGAGACTCCTATGCACCCTT CTGCTTCTTTCTCAAATGGGGATGGATATGATAGCGATGGCTCCAATTTCGATACGCCTACACCAGCAACCCTTTCCATGGCTATTCCGGCAGAACTTGC TGGTGCTATACCATTGATTGATAAATTTCAGGTTGAGGGATTCTTAAAATTGATGCAGAAACAGATTCAATCCACTGGGAAACGTGGGTTCTTTTCTAAA AAATCTGTAGGTCCACAAGTTCGGGAAAAATTCACATTCGAGGATATGCTGTGTTTCCAAAAGGATCCTATACCAACTTCGGTGCTTAAAATTAATGGTG ACCTAGTAAGCCGTGCCACTAAACTGTTCCAAATAATTTTGAAGTACATGGGAGTTGATTCATCTGATCGAGGAGCTCCAGCAAGCTTAGATGAACAGAT TGAGCTAGTTGGAAAATTGTTCAAGCACACACTGAAGCGTGCAGAACTTCGAGATGAAATTTTTGCTCAGATTTCAAAGCAAACAAGGAACAACCCTGAC AGGCAATATTTGATTAAAGCATGGGAGCTAATGTACTTGTGTGCTTCTTCTATGCCTCCTAGCAAGGAAATTGGTGGATATTTATCTGAGTATGTCCATA ATGTAGCATATGGTGCAAGTACTGATTCTGAGGTCCAAATCCTTGCATTAAATACACTAAATGCTTTGAAGCGTTCTGTCAAAGCTGGTCCTAGACATAC AACACCAGGGCGTGAGGAAATTGAAGCTCTTCTAACTGGTCGAAAGCTTACAACAATAGTGTTTTTTTTGGACGAAACTTTTGAAGAAATCACGTATGAC ATGGCAACGACAGTGTCCGATGCTGTTGAGGAACTTTCTGGGTTAATCAAGCTGTCAGCATTTTCTAGCTTCAGTCTTTTTGAATACTGTAAAGTTGTTT CTGGTTCGAAGTCATCTGATCCTGGGAATGAGGAGTACATTGGGTTAGATGATAACAAATATATTGGAGATTTGTTAGCGGAATTCAAGGCAGCCAAGGA TCGAAGCAAGGGAGAAATTTTGCACTGCAAGCTGATATTTAAGAAAAAGCTATTTCGGGAGTCAGATGAAGCTGTAACAGATCCAATGTTTGTGCAATTA TCATATGTTCAGTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGGAGGGAGGATGCTGCGCAGTTGTCTGCATTGCAAATATTAGTTGACATTG GATTTTTCGGTAGTCAAGAATCATCCATTGATTGGACCTCTCTCCTTGAGCGATTTCTACCCAGACAAATTGCAATTACACGAGGAAAGAGGGAATGGGA GTTGGATATTCTTTCTCGTTACCATTCCATGGAAAATCTGACAAAGGATGATGCAAGACAGCAATTTCTACGCATATTAAGGTCGCTTCCCTATGGCAAT TCAGTTTTCTTCAGTGTTCGCAAGATTGATGATCCTATTGGACTTTTGCCTGGTCGGATTATTTTGGGCATTAACAAGCGAGGGGTGCACTTCTTCCGTC CAGTTCCAAAGGAATATTTACATTCAGCAGAATTAAGAGACATAATGCAGTTTGGTAGTAGCAATACTGCTGTTTTCTTCAAGATGAGAGTTGCAGGTGT TCTGCACATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGTGTTGCTCTTCAAACACATATAAATGATGTCATGATGCGTCGTTATTCTAAAGCT CGGACTGTTGCTAGCGGCTCGGTGAATGGAGATGTTCTTAACAATTCTAACCCTACCAGTGTAGAAGTGCACGAAAAACGTTTAAACGAATTGTCAAAAA CTATTGAAGAATCTCAGAAGAAATCTGAACAATTAGTGGAAGAATTGCATGAGAAGCAAAATCAAGAAGTGAAATTGCAAGAGCAATTGGAGGGCTTGAA AGATTCCTTGAGATCAGCGAAGCAGAACTTGGCAGAAGTAGAGTGTGATCGTGATAGACTTAAGTCACTGTGTGCTGAAAAGGATGCAGCCTTTCAAGTT GTGTTGTCAGAAAAGAGGAGCATGGAAACCAGGTTGGCCAGCCTCAGTAATCTCACACTAGAGAAAAATGCCAAAAATGATTTAGTTGGAGCTAATAACC AGGTGTTGCATAAGCTCCAGGATGAATTGAAACTGCGGAATGAGGAACTGCGTGCAGCAGAAGAAAGGATGCAAAGATTGGGTAATGAAAATTTTTTACT TGAACAGAAGATCTCTAGGTTTGCAAGGAAAGTTGAAGAGATGGAAGTTGTTGAGAAAAACATTGAGCAGGAACGCCAATCCTTAAAGCTTCGAGTGATT GAACTTGAACGGAAGCTGGAAATGGTCACACGAGATTTGGCCACTTCCAAATCAACTCTTGCAATTGTGAATGCAGATTTAGCTTCATTGCAGAACAATT TGAAGGAATTGGAGGATTTGAGAGAAATGAAAGAGGACATTGACAGAAAGAATGAGCAGACTGCTGCCATTTTGAAGATGCAAGCATCTCAACTTGCTGA GCTAGAAGTGCTTTATAAGGAAGAACAAGTTTTGCGGAAACGTTATTTTAATACCATAGAAGATATGAAAGGCAAGATCAGGGTTTTCTGTCGGTTAAGG CCTCTAAGTGAGAAAGAGATTTCTGAAAAGGATAGAGGCCTGCTTACAAGCACAGATGAATTTACAGTTGAACATCCATGGAAAGATGATAAAGCAAAAC AGCATGTATATGATCGAGTGTTTGATGGAAATGCTACCCAGGAAGATGTTTTTGAGGATACACGATATTTAGTTCAGTCTGCTGTGGATGGTTACAATGT TTGCATATTTGCCTACGGCCAAACTGGTTCTGGGAAGACATTTACTGTTTATGGCTCTGAAGGCAATCCTGGACTGACACCACGTGCCACTTCAGAACTT TTTAAAGTTTTAAGACGAGATAGCAACAAATTCTCATTTTCATTAAAGGCATATATGGTGGAGTTGTATCAAGATACGCTTGTGGACCTTCTATTACCAA AAAATATGAAGCGCCTAAAATTGGATATTAAAAAAGATTCAAAGGGTATGGTTTCTGTTGAAAATGTGACAGTTGTATCCATTACTACATTTGAAGAATT GAAAAACATTATTCAGAGAGGATCTGATCGGCGGCATACATCTGGGACTCAAATGAATGAAGAAAGTTCAAGGTCTCATTTGATTCTTTCAATTGTTATT GAAAGTACTAACCTTCAAACTCAGTCAGTAGCAAGGGGAAAGTTAAGTTTTGTGGACCTTGCCGGTTCAGAAAGAATAAAGAAGTCAGGCTCTTCAGGTA GTCAACTTAAGGAAGCTCAAAGCATCAACAAGTCACTTTCAGCCCTCGGGGATGTCATTAGCGCGTTATCTTCTGGTGGTCAACACATACCTTATAGGAA CCACAAGTTAACAATGTTAATGAGTGATTCCCTGGGTGGTAATGCAAAGACACTTATGTTCGTGAATGTATCTCCGGCCGAATCAAATTTAGACGAGTCT TACAATTCTCTAATGTATGCATCAAGAGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTATCGTCAAAAGAGGTTGCTCGGCTGAAAAAACTGGTTG CACATTGGAAAGAACAGGCGGGTAAGAGAGGGGATGATGATGATCTCGAAGATATTCAAGAACAAAGACCAGTGAGAGAGAAGACAGATGGTCGTCATTC GATGTAG
AA sequence Show only first row Show all	>Potri.001G455300.1 pacid=42790496 polypeptide=Potri.001G455300.1.p locus=Potri.001G455300 ID=Potri.001G455300.1.v4.1 annot-version=v4.1 MKLDVHSLMAQSIRSRRTSFNSTNGNEETPMHPSASFSNGDGYDSDGSNFDTPTPATLSMAIPAELAGAIPLIDKFQVEGFLKLMQKQIQSTGKRGFFSK KSVGPQVREKFTFEDMLCFQKDPIPTSVLKINGDLVSRATKLFQIILKYMGVDSSDRGAPASLDEQIELVGKLFKHTLKRAELRDEIFAQISKQTRNNPD RQYLIKAWELMYLCASSMPPSKEIGGYLSEYVHNVAYGASTDSEVQILALNTLNALKRSVKAGPRHTTPGREEIEALLTGRKLTTIVFFLDETFEEITYD MATTVSDAVEELSGLIKLSAFSSFSLFEYCKVVSGSKSSDPGNEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVQL SYVQLQHDYILGNYPVGREDAAQLSALQILVDIGFFGSQESSIDWTSLLERFLPRQIAITRGKREWELDILSRYHSMENLTKDDARQQFLRILRSLPYGN SVFFSVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMMRRYSKA RTVASGSVNGDVLNNSNPTSVEVHEKRLNELSKTIEESQKKSEQLVEELHEKQNQEVKLQEQLEGLKDSLRSAKQNLAEVECDRDRLKSLCAEKDAAFQV VLSEKRSMETRLASLSNLTLEKNAKNDLVGANNQVLHKLQDELKLRNEELRAAEERMQRLGNENFLLEQKISRFARKVEEMEVVEKNIEQERQSLKLRVI ELERKLEMVTRDLATSKSTLAIVNADLASLQNNLKELEDLREMKEDIDRKNEQTAAILKMQASQLAELEVLYKEEQVLRKRYFNTIEDMKGKIRVFCRLR PLSEKEISEKDRGLLTSTDEFTVEHPWKDDKAKQHVYDRVFDGNATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTVYGSEGNPGLTPRATSEL FKVLRRDSNKFSFSLKAYMVELYQDTLVDLLLPKNMKRLKLDIKKDSKGMVSVENVTVVSITTFEELKNIIQRGSDRRHTSGTQMNEESSRSHLILSIVI ESTNLQTQSVARGKLSFVDLAGSERIKKSGSSGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDES YNSLMYASRVRSIVNDPSKNVSSKEVARLKKLVAHWKEQAGKRGDDDDLEDIQEQRPVREKTDGRHSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	0	1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	2.82	0.8903	Pt-MOR1.1
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	3.74	0.8820
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	9.21	0.8695
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	12.48	0.8789
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	15.42	0.8143
AT3G55420			unknown protein		Potri.008G055800 [exp]	15.87	0.8450
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	16.43	0.8651
AT5G50860			Protein kinase superfamily pro...		Potri.015G103300 [exp]	17.66	0.8099
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	17.94	0.8049
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	18.70	0.8411

Compare expression of checked genes

Potri.001G455300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.