Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARRO.2,2OGox14
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14130 377 / 7e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14120 326 / 8e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 121 / 5e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 120 / 9e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 120 / 1e-31 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G80330 119 / 5e-31 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT3G19010 117 / 3e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G50960 116 / 4e-30 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT4G21690 115 / 7e-30 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT5G24530 114 / 2e-29 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146600 [exp] 548 / 0 AT1G14130 366 / 6e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G145300 [exp] 139 / 9e-39 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 130 / 2e-35 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.016G117100 [exp] 129 / 8e-35 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 129 / 1e-34 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G026700 [exp] 125 / 2e-33 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G176200 [exp] 123 / 4e-33 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176600 [exp] 124 / 6e-33 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.002G159500 [exp] 123 / 7e-33 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031054 [exp] 383 / 2e-134 AT1G14130 352 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030567 [exp] 130 / 2e-35 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 129 / 6e-35 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 126 / 8e-34 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 125 / 1e-33 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 125 / 1e-33 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 126 / 2e-33 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10016659 [exp] 124 / 3e-33 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 125 / 4e-33 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006759 [exp] 122 / 3e-32 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G455400.1 pacid=42788285 polypeptide=Potri.001G455400.1.p locus=Potri.001G455400 ID=Potri.001G455400.1.v4.1 annot-version=v4.1 ATGGGAGAGAGTGGTGTCCCAACAATAGATCTGCAAGAGTTTCCAGGACAGTATGAGAAACTGAGAAGAGCATGTGAAGAGTGGGGCTGTTTCAGGCTCG TGAATCACAATATCTCTTTGGCCCTCATGGCAGATATGAAGAGGGTTGTGAGATCATTGTTAGACCTGCCCTTCGATGTGAAAAAGCGCAACTTAGATGT CATATCTGGGAGTGGCTACATGGCACCAAGCCAAGTCAACCCTCTTTACGAGGCTTTGGGACTTTATGATATGGGGTCTTCACAGGCTGTGGAAACTTTC TGCTCCCAATTGGATGCCTCTTCTTACCAAAGAGAAGTTATAGAGATGTATGCCAAGGCAATTCATGGGGTGGCCAAGGATGTAGCTCGAAAGTTGGCTG AAAGTTTAGGGTTAAGTGGTGATTTTTTTGAGTCATGGGTTTGCCAGTTCAGGATCAACAAGTACAACTTCACCCCTGAAACTATAGGCTCCTCTGGAGT CCAAATACATACAGATTCTGGGTTCCTGACTATCCTTCAAGATGATAAAAATGTTGGAGGGCTTGAAGTGATGAACCCGTCTGGTGTGTATGTAGCTGTT GATCCGGTGCCAGGCACCCTCCTGATCAATCTTGGAGACATTGCTAAGGCATGGAGCAATGGGAGGTTTCGTAACGTGCAGCATCGAGTGCAATGCAAGG AAGCTACAATTCGGATTTCAATTGCTTCATTCCTGCTGGCTTCCGATGAGGAAGTGGAAGCTCCGCCGGAACTTGTGGACTCTGAACACCCTCGTCTCTA TGTCCCTTTCACTTATGAAGATTACAGAAAGCTGAGACTTACCACAAAATTGCAGGCTGGTGAAGCCCTTGAACTTAAACGTATCAAGTCCTAA
AA sequence Show only first row Show all	>Potri.001G455400.1 pacid=42788285 polypeptide=Potri.001G455400.1.p locus=Potri.001G455400 ID=Potri.001G455400.1.v4.1 annot-version=v4.1 MGESGVPTIDLQEFPGQYEKLRRACEEWGCFRLVNHNISLALMADMKRVVRSLLDLPFDVKKRNLDVISGSGYMAPSQVNPLYEALGLYDMGSSQAVETF CSQLDASSYQREVIEMYAKAIHGVAKDVARKLAESLGLSGDFFESWVCQFRINKYNFTPETIGSSGVQIHTDSGFLTILQDDKNVGGLEVMNPSGVYVAV DPVPGTLLINLGDIAKAWSNGRFRNVQHRVQCKEATIRISIASFLLASDEEVEAPPELVDSEHPRLYVPFTYEDYRKLRLTTKLQAGEALELKRIKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	0	1	Pt-ARRO.2,2OGox14
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G020900 [exp]	2.00	0.7036
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	2.82	0.7197	Pt-BON1.3
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.004G075800 [exp]	11.61	0.6314
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.012G022800 [exp]	13.41	0.6392
					Potri.008G030801 [exp]	18.57	0.6059
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	23.32	0.5920	Pt-GPA1.2
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	23.66	0.6414
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	34.08	0.6340
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	48.78	0.6102
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	52.15	0.5890	DREB65

Compare expression of checked genes

Potri.001G455400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.