Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 366 / 3e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 360 / 5e-115 RLK receptor lectin kinase (.1) AT5G03140 360 / 2e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 359 / 2e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 357 / 1e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 353 / 2e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 353 / 2e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 343 / 1e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 340 / 1e-107 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146500 [exp] 1161 / 0 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 652 / 0 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 456 / 3e-152 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 445 / 5e-148 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 395 / 2e-128 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 391 / 6e-127 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.010G200600 [exp] 388 / 2e-125 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 386 / 6e-125 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 385 / 6e-125 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009423 [exp] 880 / 0 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 864 / 0 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 409 / 7e-135 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 400 / 2e-130 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004166 [exp] 399 / 2e-130 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 390 / 3e-126 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 384 / 2e-124 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10016257 [exp] 385 / 4e-124 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 380 / 5e-122 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 379 / 6e-122 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G455500.1 pacid=42787760 polypeptide=Potri.001G455500.1.p locus=Potri.001G455500 ID=Potri.001G455500.1.v4.1 annot-version=v4.1 ATGGATCTTCAAGCAAGCATTGCTATCATCATTTCTTTCCTGATTTTTGCTTTCTCTCAAGCTCAAGACTTGCAACCTTTCCACCAAGAATATGGTCCAT TTAACGAAACTTACTATGGCATCTTTGAAGTAGAAGAACCCGCCACAATCAGCAACAGTGCCCTTCAGATTACTCCTGATTCTATCAATGGCAACTTCAC TCTTGCGAACAGGTCCGGCAGGGTAATGCTCAATAAGTCCTTTACCCTCTGGGAGGATGATGGGGTTGGCGGCGCAAGGGTGGCTTCTTTCAATAGTTCT TTTCTTATTAACATCTTTCGGCTTAACAACTCCATACCTGGAGAAGGGTTTGCCTTTCTCATAGCTCCGGACCTTGAGCTCCCGGAGAATAGTAACGGGC AGTATCTTGGTCTGACCAACTCGACTACTGACAACAATCCCTCCAATGGCATAGTTGCCATTGAGCTTGATACTGTGAAGCAGGAATTTGATCCTGATGA TAACCACATGGGCCTTAATATCCACAGTGTCATTTCTCGGAAAACCGTTCCCCTTGTCAACTTGGGCATTGAAATTGCCCCTGTGGGAGGCAGGAATCAT ATGGTTTGGGTTCATTATTATGGGAACAGTAAAAGAATGGAAGTGTATATGGTGGAGGAAGGAAAAGGCAAGCCTGCCACGCCGACTCTCGCCGCAGAAC TTAACCTCAAGGAACATGTCAGACCGAAATCTTACTTCGGTTTTGCTGCATCCACAGGCAGCAATTTCCAACTCAATTGTGTCCTCAAGTGGAACCTGAC AGTAGAGATGCTATCTGATCCGGTTGTAAATGGTAGTGGTAGAGATAACAAGAAGCTGATAAAGATCTGTGTAGGAATTGGGGTTGCTCTATTTTCATTT CTGCTGATAGGGGTAGGAAGTTTGGTCTACTATCTCCACAAGAAGAGGGCAGCATCGGACCCTAAGCTGTTACGTGCCCTTCAGAGCTTGCCCGGAATGC CGAGGGAGTTCCCGTTCAAGGATCTGAAGAAGGCCACCAACAATTTCGATGAGAAGCATAAGCTTGGTCAAGGTGGATTTGGTGTGGTCTACAAAGGTGT GCTGCCAAAAGAGAACATCCAAGTTGCTGTCAAAAAGTTCTCTAGAGACAACATCAAGGGTCAGGATGATTTCCTGTCTGAGCTTACTGTCATTAACCGT CTCCGCCATAAACATCTAGTCCGGTTACTCGGCTGGTGCCACAAGAATGGGATGTTGCTTCTAGTGTATGACTACATGCCAAACGGGAGTTTGGACAATC ACCTATTCCATGAAGATGAGGAGAATACCATCCTAGGGTGGAACTTAAGGTACAAGATCATATCAGGTGTAGCATCAGCTCTGCACTACCTCCATAAGGA ATATGATCAGACAGTGGTGCATCGCGACCTCAAGGCTAGTAATATCATGCTGGATTCTGAGTTCAATGCTCGATTAGGTGACTTCGGTCTGGCTCGTGCA TTGGAGAATGAGAAGACATCCTATGCTGAGCTAGAGGGAGTGCCTGGAACCTTGGGCTACATCGCACCAGAATGCTTTCACACTGGCAAGGCCACCCCCG AGTCTGATGTCTATGGCTTCGGTGCAGTAGTTCTAGAGGTAGTGTGCGGTCAGCGTCCATGGACCAAGATTGGAGGATTCCAATTCTTGGTGGACTGGGT CTGGTCACTACATCGCGAAGGGCGTATACTAGAAGCTGTGGACGAAAGGCTGAACAATGACTATGTTGCTGAGGAAGCACAGAGGCTGCTGCTACTCGGA CTAGCATGTTCCCATCCGATAGCAAACGAAAGGCCTAAAACACAGGCCATCTTTCAAATAGTATCCGGGTCAGTGCCAGCGCCGCGCGTCCCTCCTTTCA AGCCAGCATTCGTATGGCCAGCATACGACGGCAGCATCGACTTCGACGCTAGTTCAGCTGGGACAACTCCCATTACATCTGGTTGGACCCCTCAATACAT CAGCAGGGAAAGTGAAGGATACACGGACTCTCCTGTGAGACCTGTCTAG
AA sequence Show only first row Show all	>Potri.001G455500.1 pacid=42787760 polypeptide=Potri.001G455500.1.p locus=Potri.001G455500 ID=Potri.001G455500.1.v4.1 annot-version=v4.1 MDLQASIAIIISFLIFAFSQAQDLQPFHQEYGPFNETYYGIFEVEEPATISNSALQITPDSINGNFTLANRSGRVMLNKSFTLWEDDGVGGARVASFNSS FLINIFRLNNSIPGEGFAFLIAPDLELPENSNGQYLGLTNSTTDNNPSNGIVAIELDTVKQEFDPDDNHMGLNIHSVISRKTVPLVNLGIEIAPVGGRNH MVWVHYYGNSKRMEVYMVEEGKGKPATPTLAAELNLKEHVRPKSYFGFAASTGSNFQLNCVLKWNLTVEMLSDPVVNGSGRDNKKLIKICVGIGVALFSF LLIGVGSLVYYLHKKRAASDPKLLRALQSLPGMPREFPFKDLKKATNNFDEKHKLGQGGFGVVYKGVLPKENIQVAVKKFSRDNIKGQDDFLSELTVINR LRHKHLVRLLGWCHKNGMLLLVYDYMPNGSLDNHLFHEDEENTILGWNLRYKIISGVASALHYLHKEYDQTVVHRDLKASNIMLDSEFNARLGDFGLARA LENEKTSYAELEGVPGTLGYIAPECFHTGKATPESDVYGFGAVVLEVVCGQRPWTKIGGFQFLVDWVWSLHREGRILEAVDERLNNDYVAEEAQRLLLLG LACSHPIANERPKTQAIFQIVSGSVPAPRVPPFKPAFVWPAYDGSIDFDASSAGTTPITSGWTPQYISRESEGYTDSPVRPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	0	1
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	1.00	0.8656
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	3.00	0.7576
					Potri.005G084100 [exp]	4.35	0.7280
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	4.58	0.7976
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	6.70	0.7336
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	7.41	0.7721
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	9.16	0.7632
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	10.39	0.7281
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	10.58	0.7332
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136700 [exp]	11.22	0.7179

Compare expression of checked genes

Potri.001G455500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.