Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10550 559 / 0 Subtilase family protein (.1.2.3) AT4G10520 551 / 0 Subtilase family protein (.1) AT1G32940 545 / 0 ATSBT3.5 Subtilase family protein (.1) AT4G10540 543 / 0 Subtilase family protein (.1) AT2G04160 542 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G32960 535 / 2e-180 ATSBT3.3 Subtilase family protein (.1) AT1G32950 534 / 6e-180 Subtilase family protein (.1) AT5G59810 530 / 2e-178 ATSBT5.4 Subtilase family protein (.1) AT4G10510 528 / 9e-178 Subtilase family protein (.1) AT4G34980 527 / 1e-177 SLP2 subtilisin-like serine protease 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146300 [exp] 1372 / 0 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.009G144500 [exp] 614 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.001G450600 [exp] 608 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.004G161400 [exp] 604 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.011G150900 [exp] 596 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 562 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 558 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 557 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G151200 [exp] 557 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 567 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10023048 [exp] 552 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 541 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002780 [exp] 541 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10033431 [exp] 521 / 5e-175 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 521 / 6e-175 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 519 / 6e-174 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10002964 [exp] 513 / 5e-172 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10037449 [exp] 513 / 1e-171 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 520 / 2e-170 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G455800.1 pacid=42789041 polypeptide=Potri.001G455800.1.p locus=Potri.001G455800 ID=Potri.001G455800.1.v4.1 annot-version=v4.1 ATGGCTTCTATAAGTTGGTGTAGCCTTTTCTGTCTCTTTCTTGCTGTTTTTGTAGCAGAAGTTGGTTTTTGCTCTTCTTCCAAGGTTTATGTGGTTTATA TGGGAAGCAAAAGTGGGGATGACCCAGATGATGTTTTGAGCCAAAATCATCACATGCTTGCTTCTGTACATGGAGGAAGTGTTGAGCAAGCGCAGGCCTC TCACCTTTATACTTATAGACATGGCTTTAAAGGTTTTGCTGCTAAGCTGACTGATGAACAAGCTTCTCAGATCGCTAAGATGCCTGGAGTGGTCTCTGTG TTTCCCAATTCGAAAAGAAAGCTACATACCACTCACTCATGGGATTTCATGGGTCTGGTGGGTGAAGAGACCATGGAGATACCAGGGCATTCAACCAAGA ACCAAGTCAATGTTATAATTGGTTTTATTGATACTGGAATTTGGCCTGAATCTCCAAGTTTTAGTGATGCCGATATGCCTCCAGTGCCAGCCAGATGGAG GGGGAAGTGCCAGCTAGGAGAAGCATTCAATGCTTCATCTTGCAACAGGAAAGTGATTGGAGCACGATACTATAAGAGTGGCTATGAAGCTGAAGAAGAT TCATCAAGGATAATGTCATTTAGATCTCCAAGGGACAGCTCTGGTCATGGCAGTCACACAGCCTCGATAGCTGCTGGTCGTTATGTTACAAATATGAATT ATAAGGGGTTGGCAGCTGGAGGGGCTAGAGGAGGTGCACCAATGGCCAGAATTGCAGTTTACAAGACATGTTGGGAGTCAGGTTGCTATGATGTTGACTT GTTAGCTGCCTTTGATGATGCAATCAGAGATGGGGTTCATATTTTGTCCGTGTCTTTGGGTCCTGATGCTCCCCAGGGAGATTATTTCAATGATGCCATC TCCATTGGGTCATTCCATGCTGCTAGCCGTGGAGTGTTAGTAGTTGCTTCAGCTGGAAATGCAGGAACCCGTGGTTCTGCAACCAACCTTGCCCCTTGGA TGATCACTGTTGGTGCTAGTTCGATGGATAGGGATTTTGCATCTGACATTGTTTTAGGAAATGCCACAAAATTCATGGGGGAAAGTCTGAGTCTCTTTGA AATGAAAGCCTCTGCAAGGATCATCTCTGCCTCTGAAGCCTTTGCAGGATATTTCACACCTTATCAATCCAGTTACTGTTTGGAGAGTTCCTTGAATGGT ACCAAAGCCAGAGGGAAAGTTCTTGTCTGTCGACATGCTGAGAGTTCAAGTGAGTCTAAGATTGCAAAGAGCCAGGTAGTGAAAGAAGCTGGAGGAGTTG GAATGGTTCTTATTGACGAGGCAGATAAAGATGTTGCCATCCCTTTTCCCATCCCTTCAGCTGTTGTGGGGAGGGAGATGGGGAGGGAGATTCTATCTTA CATAAATAACACACGCAAACCAATGTCAAGAATTTCCCGTGCAAAGACAGTTTTGGGTTCTCAACCAGCACCTCGTATTGCTTCATTTTCTTCCAAAGGA CCCAATTCCCTGACACCTGAAATTCTGAAGCCTGATGTTGCAGCTCCTGGACTGAACATCCTCGCTGCCTGGTCTCCAGCAGCTGGGAAAATGCAATTCA ACATTCTTTCTGGAACTTCTATGTCATGCCCACACATAACAGGAGTTGCAACCTTGATCAAAGCAGTTCACCCGTCTTGGTCTCCATCTGCCATCAAGTC TGCAATCATGACCACAGCTACTATCCTGGATAAGAGTGGCAAACCCATCAGAGTGGATCCTGAAGGAAGAATGGCCAATGCATTTGATTATGGATCAGGG TTTGTTGATCCTACAAGAGTTCTTGATCCTGGCCTCGTCTATGATGCCCATCCAATAGATTATAAAGCTTTTCTCTGTTCAATTGGTTATGATGAGAAAT CACTGCATCTGGTCACAAGAGATAACAGCACATGTAATCAGACATTTACAACAGCTTCCAGCCTCAATTACCCTTCAATCACTGTTCCAAATCTTAAAGA CAGCTTCTCAGTGACTCGAACCGTGACAAATGTTGGGAAAGCGAGAAGTGTTTACAAAGCTGTAGTGTCTAATCCGGCAGGAATCAATGTTACCGTTGTG CCAAAGCAACTAATCTTTAACAGCTATGGCCAGAAGATCAAATTCACAGTGAATTTCAAGGTGGCTGCTCCATCAAAGGGCTATGCATTTGGTTTTTTGA CATGGAGGAGTACAGATGCACGGGTCACCAGCCCCCTAGTTGTCCGGGCTGCACCCTCTCCCATGGGGCTGATGAGATAG
AA sequence Show only first row Show all	>Potri.001G455800.1 pacid=42789041 polypeptide=Potri.001G455800.1.p locus=Potri.001G455800 ID=Potri.001G455800.1.v4.1 annot-version=v4.1 MASISWCSLFCLFLAVFVAEVGFCSSSKVYVVYMGSKSGDDPDDVLSQNHHMLASVHGGSVEQAQASHLYTYRHGFKGFAAKLTDEQASQIAKMPGVVSV FPNSKRKLHTTHSWDFMGLVGEETMEIPGHSTKNQVNVIIGFIDTGIWPESPSFSDADMPPVPARWRGKCQLGEAFNASSCNRKVIGARYYKSGYEAEED SSRIMSFRSPRDSSGHGSHTASIAAGRYVTNMNYKGLAAGGARGGAPMARIAVYKTCWESGCYDVDLLAAFDDAIRDGVHILSVSLGPDAPQGDYFNDAI SIGSFHAASRGVLVVASAGNAGTRGSATNLAPWMITVGASSMDRDFASDIVLGNATKFMGESLSLFEMKASARIISASEAFAGYFTPYQSSYCLESSLNG TKARGKVLVCRHAESSSESKIAKSQVVKEAGGVGMVLIDEADKDVAIPFPIPSAVVGREMGREILSYINNTRKPMSRISRAKTVLGSQPAPRIASFSSKG PNSLTPEILKPDVAAPGLNILAAWSPAAGKMQFNILSGTSMSCPHITGVATLIKAVHPSWSPSAIKSAIMTTATILDKSGKPIRVDPEGRMANAFDYGSG FVDPTRVLDPGLVYDAHPIDYKAFLCSIGYDEKSLHLVTRDNSTCNQTFTTASSLNYPSITVPNLKDSFSVTRTVTNVGKARSVYKAVVSNPAGINVTVV PKQLIFNSYGQKIKFTVNFKVAAPSKGYAFGFLTWRSTDARVTSPLVVRAAPSPMGLMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	2.44	0.7888
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	3.16	0.8207	ATHB.11
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	4.00	0.7875
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	6.32	0.7383
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	7.34	0.7650
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	7.48	0.7581
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	7.74	0.7827
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	12.12	0.7358
AT4G28100			unknown protein		Potri.013G148700 [exp]	12.68	0.7347
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.011G153300 [exp]	12.80	0.7947

Compare expression of checked genes

Potri.001G455800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.