Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 57 / 1e-09 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 56 / 4e-09 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 56 / 4e-09 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 55 / 9e-09 Vacuolar iron transporter (VIT) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146100 [exp] 291 / 8e-99 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 56 / 3e-09 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.002G069400 [exp] 55 / 9e-09 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 53 / 4e-08 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025685 [exp] 68 / 4e-13 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 67 / 9e-13 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 66 / 1e-12 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 59 / 3e-10 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 58 / 7e-10 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 57 / 2e-09 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 57 / 3e-09 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 56 / 3e-09 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 56 / 5e-09 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [poplar] [flax] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Potri.001G456000.1 pacid=42792482 polypeptide=Potri.001G456000.1.p locus=Potri.001G456000 ID=Potri.001G456000.1.v4.1 annot-version=v4.1 ATGGCTTCACATCAAATATCAGAAACTTGTGCTGAACATAAGATTTCAGTAGCCGATGAAGATGCTCAGAAAGTCCAGAGATTGCGGCGAGCTCAATGGC TCCGAGCAGCTATTCTGGGAGCTAATGATGGTTTGCTTTCCACTACATCACTAATGCTCGGCGTAGGTGCAGCAAAGGAAGATAGCCGGTCCATGGTCTT GTCTGGACTGGCTGGAGCTCTTGCAGGTGCCTGTAGCATGGCTGTTGGGGAGTTTGTTTCAGTCTCAACCCAGAGAGATATCGAAAGGGAAACTGTAAGC GATTTCAGTTCAAAAAATGATGGAAAAGATTCTCCTGGAATCAGACTCGATGTCACAGCAACGCTAGCAAGCATGAATGGAGAAGCGAAGCTAGATGATC TCCCTGGAAATATACAGTTTGCCAAGCTCATCTCTGAGCCAACACAGAGAAGGTCACCAAGTATGATCCACGAGCCAAAGTTGCCTCCGGGTATGTCTCC TGGAAGGTCTCCTGCAATGAAAGTAATTCAAGAAGATGCGAAGAAAAGTGCTGAAATAATGCTGGAGGATGACAGAGAAGAGGTGCTAACAAACCCCTAC AAGGCTTCAATTGCATCAGGTTTATCATTTTTGATAGGATCTTGTGTGCCTTTGCTGTCTGCCGTGCTTGTTGCTCAAAATGTTGTTAGTATTGTGATGA TTCCTGTGGTTGCATCAGTAGCTCTGGCTTTTTTTGGAGGCCTGGGAGCTTATCTTGGCGGTTCACCAGTTAGGATATCTGCAGTAAGAATTCTACTTGG AGGTTGGATTGCCATGGCAATTACTTACGGGTTGCTCAAGCCTTTCGATAAGGATCGTAGTTGA
AA sequence Show only first row Show all	>Potri.001G456000.1 pacid=42792482 polypeptide=Potri.001G456000.1.p locus=Potri.001G456000 ID=Potri.001G456000.1.v4.1 annot-version=v4.1 MASHQISETCAEHKISVADEDAQKVQRLRRAQWLRAAILGANDGLLSTTSLMLGVGAAKEDSRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIERETVS DFSSKNDGKDSPGIRLDVTATLASMNGEAKLDDLPGNIQFAKLISEPTQRRSPSMIHEPKLPPGMSPGRSPAMKVIQEDAKKSAEIMLEDDREEVLTNPY KASIASGLSFLIGSCVPLLSAVLVAQNVVSIVMIPVVASVALAFFGGLGAYLGGSPVRISAVRILLGGWIAMAITYGLLKPFDKDRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	0	1
AT3G51510			unknown protein		Potri.011G146200 [exp]	2.82	0.7865
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	3.16	0.8006	Pt-SAL2.1
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	9.48	0.7763	TIM.2
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	10.00	0.7712
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	10.77	0.8062
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	12.32	0.7482
AT1G79160			unknown protein		Potri.005G096800 [exp]	19.59	0.7259
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	20.83	0.7787
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	21.90	0.7604
AT3G15090			GroES-like zinc-binding alcoho...		Potri.001G373200 [exp]	26.53	0.7418

Compare expression of checked genes

Potri.001G456000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.