Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20925 385 / 4e-131 Auxin efflux carrier family protein (.1) AT1G76520 383 / 4e-131 Auxin efflux carrier family protein (.1.2) AT1G76530 322 / 8e-107 Auxin efflux carrier family protein (.1) AT5G65980 298 / 9e-98 Auxin efflux carrier family protein (.1) AT2G17500 282 / 9e-92 Auxin efflux carrier family protein (.1.2.3.4) AT1G71090 179 / 2e-51 Auxin efflux carrier family protein (.1) AT5G01990 164 / 6e-46 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 421 / 4e-146 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456400 [exp] 390 / 1e-133 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 387 / 1e-132 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 361 / 2e-122 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 358 / 5e-121 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 315 / 2e-104 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 250 / 2e-78 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.008G127700 [exp] 161 / 8e-45 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 159 / 5e-44 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025166 [exp] 392 / 2e-134 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 388 / 7e-133 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 321 / 2e-106 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 319 / 4e-106 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 316 / 1e-104 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 293 / 7e-96 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 275 / 2e-83 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019229 [exp] 194 / 2e-54 AT5G23490 667 / 0.0 unknown protein Lus10003240 [exp] 142 / 2e-36 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 133 / 2e-34 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.001G456300.1 pacid=42788655 polypeptide=Potri.001G456300.1.p locus=Potri.001G456300 ID=Potri.001G456300.1.v4.1 annot-version=v4.1 ATGCGGCTCCTTGATCTACTTTATATTGCTTCTGTGCCAATTTTGAAAGTACTAATTCTAACAGCACTTGGATCACTTCTTGCATTGGACAATATACATG TCTTGGGAGAGAGTACGAGGAAAGAACTAAATCGAGTAGTGTTTTTGGTGTTTAGTCCAGCACTGGTGGTTAGCAGCCTGGCTAAAACAATCACCTATGA AAACATTGTTACGTTGTGGTTCATGCCAGTCAATATTCTTTGTGCATTCATTGTTGGCTCAGCACTAGGATGGATACTCATAAAAATCACAAGACCTGCC AAACAACTTAAAGGCCTCATATTGGGTTGCTGTGCTGCAGGAAACAATGGAAGTTTGCTTTTCATCATCATCCCAGCAGTCTGTAGTGAGAAAGGCAGTC CATTTGGATCACCTGATGTTTGCTCTACATACGGAATGGCTTATGTTTCTCTTTCCTTGGCAGTAAGCGCCATTTATATGTGGTCTTATGTTTATAACGT TGTGAGGGTTTCCTCAAGGGATGTCAACAAAGAAGCTGATAGTGATGGCCATGGTGGCTCCACAAGTACTGTGAAGGATGCCGGAGAAACACCAGAACTC ATCCAAGGGAATTACTCGGAAGCTTTTCTTCCTTCCAAAGAGTTTCCAGTTTCCGATGAATATGAGTTACTTCTTCCTTGCACAAATTCTGAGGGAATTG TTAAGGTACACTTATCTGACAAGATTAAGCAATGCTTCAGGATGATATCAAGAAAGCTAAATCTGAAGGCAGTCTTTGCACCTTCAACTACCGCAGCGAT TGCTGGCTTTATAATTGGAGTGATTCCTCAAATTCGGAATTCCTTAATCGGTGCTAGTGCCCCTCTTCATGTAGTTGAAGATTCTGCTTCTCTGATAGGG GATGCAGCCATCCCAACAGTCACTTTAATTGTCGGAGGAAACCTTCTTAGAGGTTTAAGAGGATCAGGAATTCAGTCGTCACTCATAGTTGGAATAGTAG CAGTTAGGTTTGTTTTCCTTCCTCTCATAGGCACTGCCATTGTTAAAGGTGCAGTCCACTTTGGTCTGGTCCATTCTGATCCATTATATCAGTTTGTCCT TCTGCTACAATTTGCAGTTCCACCAGCATTGAACATAGGCACAATTACTCAGTTATTTGGAGCTGGAGAAAGTGAATGCTCTGTGATAATGTTATGGACA TATGCGTTGGCATCAATTTTTCTAACTCTGTGGTCAACCCTTTTCATGTGGCTAGTAGCTTGA
AA sequence Show only first row Show all	>Potri.001G456300.1 pacid=42788655 polypeptide=Potri.001G456300.1.p locus=Potri.001G456300 ID=Potri.001G456300.1.v4.1 annot-version=v4.1 MRLLDLLYIASVPILKVLILTALGSLLALDNIHVLGESTRKELNRVVFLVFSPALVVSSLAKTITYENIVTLWFMPVNILCAFIVGSALGWILIKITRPA KQLKGLILGCCAAGNNGSLLFIIIPAVCSEKGSPFGSPDVCSTYGMAYVSLSLAVSAIYMWSYVYNVVRVSSRDVNKEADSDGHGGSTSTVKDAGETPEL IQGNYSEAFLPSKEFPVSDEYELLLPCTNSEGIVKVHLSDKIKQCFRMISRKLNLKAVFAPSTTAAIAGFIIGVIPQIRNSLIGASAPLHVVEDSASLIG DAAIPTVTLIVGGNLLRGLRGSGIQSSLIVGIVAVRFVFLPLIGTAIVKGAVHFGLVHSDPLYQFVLLLQFAVPPALNIGTITQLFGAGESECSVIMLWT YALASIFLTLWSTLFMWLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	1.73	0.9621
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	2.82	0.9600
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	6.00	0.9545
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	6.48	0.9400
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	8.12	0.9447
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	8.94	0.9374
AT4G09660			unknown protein		Potri.014G176225 [exp]	9.48	0.9373
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	10.67	0.9114
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G030701 [exp]	12.48	0.9290
AT1G74180		AtRLP14	receptor like protein 14 (.1)		Potri.001G064600 [exp]	12.72	0.9223

Compare expression of checked genes

Potri.001G456300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.