Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17410 416 / 1e-137 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76510 352 / 7e-117 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 345 / 5e-115 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76110 57 / 1e-08 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 48 / 1e-05 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G145450 [exp] 738 / 0 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.004G208900 [exp] 387 / 2e-129 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 354 / 8e-118 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.005G257300 [exp] 172 / 3e-49 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.001G315200 [exp] 53 / 4e-07 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 49 / 6e-06 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 45 / 0.0001 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022981 [exp] 365 / 1e-120 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10001618 [exp] 365 / 2e-120 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10016045 [exp] 304 / 3e-98 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10021228 [exp] 52 / 4e-07 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 52 / 1e-06 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10007127 [exp] 52 / 1e-06 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10014762 [exp] 43 / 0.0006 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10013852 [exp] 0 / 1 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10026569 [exp] 0 / 1 AT1G76510 164 / 1e-51 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G456500.1 pacid=42790491 polypeptide=Potri.001G456500.1.p locus=Potri.001G456500 ID=Potri.001G456500.1.v4.1 annot-version=v4.1 ATGCTGTATGTGTTGTGTGTAGAATCAGAGATGAGTAATAAGGACAATGAGGTTGGATCAGCACGGGAAGTGCCTGGTACTTTAGAGACAGAGCAGCTGG TTGATGCACAAGAAGCCCCCGTGGAACAAGCTGATAATCCTTCTCCTTCTAATGCTGACGCTGTTGATATCCCTTTGGAGTTGAATTCCCGTCTACAGCA ACCCCACCAAGATTCTGCTCTGTCAACCCCATTTGATGATAAAAGAAGCTTAGTCATGCCTAAAGTTGAATCTGTGAAAGATGTCAAAGCCAACGGAACA TATAATTCGGAACCTGAAACATGTGCTGGAGACGGCATTGCTATTTCAAGTAGTCATGTTGAAACTGCTAAACCCACTGTAGATGCTGAAATAAAGCCCT CTGACATACAGGGTGCAACTGGTCATGATACTTGGGCAGTTGTTAAGTGGAGTAACGAACCAGCCGAGCCTCAGGCTGGATCTTCAGACAATGAGGCTAA AGGTGATAACAAGAGAGGATCAGATGATGCAAAGAACAATATAGATATGCCTAGTCCCAAAAGTAATGGAAACTCTACACCTAGGCGTACATTTCTTTTG GATGAAAATAGTGGTGGTAGTGAATCGGGTACAGAAGAGGAGCAAAATGATTTTCTGAGTGAGCTTCATAGTTTCTTTAGCGAGAAGAGCATGGAGTTTA AACCTCCTAAGTTCTACGGAGATCTCCTAAACTGTCTTAAGCTGTGGAGATCTGTGATGAGATTGGGTGGTTATGACAAGGTGACCTCATGTAAGCTGTG GAGGCAAGTAGGAGAATCCTTTAAACCCCCAAAGACATGCACTACAATTTCGTGGACATTTCGAGGGTTTTATGAGAAGGTACTACTTGATTATGAAAGA CACATAACAAATGCTGGTGAGCCTGACATCCCCATTGCTTCCAAGTCTGAGCCCAAGCAGCTGAAGCCGCCCAAGCTGTCCAGGTCAGAGCCTGTGCATG TCGACACTCAGGCTTCTGGATCGGGTAGAACTCGTAGGGATGCTGCTGCACGTGCAATGCAGGGTTGGCACTCACTTCGTTTTCTTGGTAATGGCGAAGT TAGTAGCCCTATCATTAAGGACAAGAATACTGTACCTGTGCAAAAGCGTGAGAAGGAGCTAAAAAACATTGGTTTACTGAAACGCAAGAAACCATCTTAC GTGGAACATGCTGTCAAATCTCCACGCACCAAAAGTGCACGATTGGATGTGGAGGTGACTGATATTGGAGCCCCAGCTGATTGGGTGAAGATCAATGTAC AGAAAACAAAAGATAGTTTCGATGTGTATGCTTTAGTTCCAGGTCTCCTCCGTGAAGAAGTTCGGGTTCAATCAGATCCAGCAGGGCGCTTGGTTATCAG TGGTGAACCTGAGCATGAGGATAATCCTTGGGGTGTCGCACCATTCAAAAAGGTTGTCAGCTTACCCTCAAGGATTGATCCACATCAGACAACAGCTGTG GTCACCTTGCATGGACAATTGTACGTCCGTGTCCCATTTGAGGAGTCAGACTGA
AA sequence Show only first row Show all	>Potri.001G456500.1 pacid=42790491 polypeptide=Potri.001G456500.1.p locus=Potri.001G456500 ID=Potri.001G456500.1.v4.1 annot-version=v4.1 MLYVLCVESEMSNKDNEVGSAREVPGTLETEQLVDAQEAPVEQADNPSPSNADAVDIPLELNSRLQQPHQDSALSTPFDDKRSLVMPKVESVKDVKANGT YNSEPETCAGDGIAISSSHVETAKPTVDAEIKPSDIQGATGHDTWAVVKWSNEPAEPQAGSSDNEAKGDNKRGSDDAKNNIDMPSPKSNGNSTPRRTFLL DENSGGSESGTEEEQNDFLSELHSFFSEKSMEFKPPKFYGDLLNCLKLWRSVMRLGGYDKVTSCKLWRQVGESFKPPKTCTTISWTFRGFYEKVLLDYER HITNAGEPDIPIASKSEPKQLKPPKLSRSEPVHVDTQASGSGRTRRDAAARAMQGWHSLRFLGNGEVSSPIIKDKNTVPVQKREKELKNIGLLKRKKPSY VEHAVKSPRTKSARLDVEVTDIGAPADWVKINVQKTKDSFDVYALVPGLLREEVRVQSDPAGRLVISGEPEHEDNPWGVAPFKKVVSLPSRIDPHQTTAV VTLHGQLYVRVPFEESD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	0	1
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	1.00	0.8708
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	1.41	0.8657
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	8.83	0.7954
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	8.83	0.8225
AT5G57700			BNR/Asp-box repeat family prot...		Potri.018G097100 [exp]	9.32	0.7257
AT3G58060			Cation efflux family protein (...		Potri.001G010200 [exp]	10.39	0.7825
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	11.61	0.7709	Pt-CCSPK1.2
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	11.83	0.7939
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	14.07	0.7746
					Potri.001G078100 [exp]	14.07	0.8081

Compare expression of checked genes

Potri.001G456500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.