Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63870 605 / 0 PP7, ATPP7 serine/threonine phosphatase 7 (.1.2.3) AT1G48120 440 / 2e-142 hydrolases;protein serine/threonine phosphatases (.1) AT5G10900 304 / 3e-97 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42810 177 / 4e-50 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G05580 140 / 4e-38 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 137 / 6e-37 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT2G29400 137 / 9e-37 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G43380 137 / 1e-36 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 135 / 3e-36 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G58500 135 / 6e-36 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G145300 [exp] 755 / 0 AT5G63870 580 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.001G196600 [exp] 368 / 7e-120 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.014G141800 [exp] 183 / 1e-51 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.003G217900 [exp] 139 / 1e-37 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 139 / 1e-37 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.019G018000 [exp] 139 / 2e-37 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.014G135800 [exp] 140 / 9e-36 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G358700 [exp] 134 / 1e-35 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.002G213300 [exp] 140 / 2e-35 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020898 [exp] 626 / 0 AT5G63870 608 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10033478 [exp] 619 / 0 AT5G63870 601 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10031381 [exp] 182 / 8e-53 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10039185 [exp] 136 / 2e-36 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 135 / 3e-36 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 135 / 8e-36 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016576 [exp] 133 / 1e-34 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10011827 [exp] 131 / 5e-34 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 129 / 9e-34 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016053 [exp] 129 / 1e-33 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.001G456600.4 pacid=42788643 polypeptide=Potri.001G456600.4.p locus=Potri.001G456600 ID=Potri.001G456600.4.v4.1 annot-version=v4.1 ATGTCAGATTCATTGCCATCTGGCTCTCCGTCAGATCACGAACCCGCCACCACCGCCACCAATTCACCAGAAGAAGCCACCACCACCTCCTCCACCACAA CAACCACGTCCACCCCAGAAGGTCCATCACCACCACCTATTCAGATCCCTCTCTCATGGCCTTCGAACTCTTCCGTCACTCTCGACTGGATCCAAAACCT CATTTCCGCCTTTGATTGGTCTTCCAAAAACCTCCCTCCATCTGAACTCCCTTCAGTCCTCCCTGTTTCCGTATTTGACGCTTTAGTCCTCACTGCCTCG AAAATTCTGCACAAAGAGCCTAATTGTGTTAGAATTGATGACTGTAATGAAAATTCTAGAGTGGTTGTTGTAGGAGATGTTCATGGGCAACTTCATGATG TTATGTTTTTGTTGCAAGATGCTGGATTTCCTTTTGAAGATCGGTTTTTTGTGTTTAATGGAGATTATGTTGATCGAGGAGCCTGGGGCCTTGAGACTTT CTTGCTCTTGTTAGCTTGGAAGGTATTTTTGCCACAAAGGGTATTTCTCCTTCGCGGCAATCATGAATCCAAGTATTGTACATCTGTGTATGGTTTTGAG AAAGAAGTTTTGGCAAAGTATGGTGATAAAGGTAAGCACGTCTATCGGAAGTGTTTGGGATGCTTTGAAGGCCTTCCCTTGGCCTCTGTTATAGCTGGGC GTGTATATACTGCTCACGGAGGACTTTTCCGCAGTGTGTCCATCACCCCATCAAAGAGATCAAAGGGAAAGAAAAATCGGAGGATAATTTTAAATTCTGA AACCAAACCATTATGTCTTGGTTCTTTGGAGGAGTTATCCAAAGCTCGAAGATCGGTTCTTGACCCTCCATGGGAAGGTCAGAACTTAATTCCTGGAGAT GTGTTATGGTCAGATCCAACAATGAAATCTGGACTTTCACCAAATACAGAGAGAGGCATTGGTTTGTTATGGGGACCTGATTGTACTGAAGATTTTTTAA AGAAGTTCGAACTGAAGCTAATCATCAGATCACATGAAGGGCCCGATGCAAGGGAAAAGAGGCCCGGTCTGGGAGGAATGGATGAAGGGTACACCATAGA TCATGTTGTACCGTCAGGAAAGCTTATTACTCTCTTTAGTGCTCCAGACTACCCACAATTTCAGGCAACCGAGGATAGATACAAGAATAAAGGAGCATAT ATTGTCCTAAAACCCCCCTGTTTTGACGATCCCGAGTTCCATAGTTTTGAAGCAATTACTCCAAGACCAGCGGTGAATGCTTATTATGATTACAAAGATG TGATCGACTCTGATGAAGAATTAGACTTGGCATCAATGGTGACCTCAACTTAA
AA sequence Show only first row Show all	>Potri.001G456600.4 pacid=42788643 polypeptide=Potri.001G456600.4.p locus=Potri.001G456600 ID=Potri.001G456600.4.v4.1 annot-version=v4.1 MSDSLPSGSPSDHEPATTATNSPEEATTTSSTTTTTSTPEGPSPPPIQIPLSWPSNSSVTLDWIQNLISAFDWSSKNLPPSELPSVLPVSVFDALVLTAS KILHKEPNCVRIDDCNENSRVVVVGDVHGQLHDVMFLLQDAGFPFEDRFFVFNGDYVDRGAWGLETFLLLLAWKVFLPQRVFLLRGNHESKYCTSVYGFE KEVLAKYGDKGKHVYRKCLGCFEGLPLASVIAGRVYTAHGGLFRSVSITPSKRSKGKKNRRIILNSETKPLCLGSLEELSKARRSVLDPPWEGQNLIPGD VLWSDPTMKSGLSPNTERGIGLLWGPDCTEDFLKKFELKLIIRSHEGPDAREKRPGLGGMDEGYTIDHVVPSGKLITLFSAPDYPQFQATEDRYKNKGAY IVLKPPCFDDPEFHSFEAITPRPAVNAYYDYKDVIDSDEELDLASMVTST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Potri.001G456600 [exp]	0	1
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	15.09	0.8282
AT5G10070			RNase L inhibitor protein-rela...		Potri.007G087000 [exp]	21.42	0.7979
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	29.39	0.8145
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	36.24	0.8036
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G323800 [exp]	41.18	0.8000
AT2G31600			unknown protein		Potri.017G035200 [exp]	52.07	0.7947
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.017G149500 [exp]	56.56	0.7918
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	59.21	0.7868
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	59.79	0.7795
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	59.79	0.7943

Compare expression of checked genes

Potri.001G456600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.