Plant FIBer expression Database

Potri.001G456700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G145200
[exp]
165 / 1e-53 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G456700.2 pacid=42793600 polypeptide=Potri.001G456700.2.p locus=Potri.001G456700 ID=Potri.001G456700.2.v4.1 annot-version=v4.1
ATGGCAGACACCGAAGTTGGGAAGAGAGGTCGTCTTCACCACCACCACCACCACCATGGAGCCAGCTGCACAAGAGGTTTCAGGCTAAAGTATCCCAGAA
GATTTTCAGTTCAGAGATTCAGAGCAAGATTTTTCTGCTTGTTCAGGTTCTTGAGTAGATGGAGATCTTCTTATGGACAAGCAGTGCAGTATTTGAAGAG
AGGGATGGGTAGGGATAGTGGCATCAAAAGATGTGGTAGCAGCAAGAGGGTATTGGTGATGGATGCAACCAGCTGCCACTACATGGAAAAAGGTGATGAA
CACTACAGTTGCAGATCGTTTGGAAGATCAAATTCTTTCTACTCTGAAGCCATTGCAGATTGCTTGGAGTTCATTAAGAGGTCATCCATCTCTGTGGAAC
AAAAACAAGTCAGCCCAAGATAA
AA sequence
>Potri.001G456700.2 pacid=42793600 polypeptide=Potri.001G456700.2.p locus=Potri.001G456700 ID=Potri.001G456700.2.v4.1 annot-version=v4.1
MADTEVGKRGRLHHHHHHHGASCTRGFRLKYPRRFSVQRFRARFFCLFRFLSRWRSSYGQAVQYLKRGMGRDSGIKRCGSSKRVLVMDATSCHYMEKGDE
HYSCRSFGRSNSFYSEAIADCLEFIKRSSISVEQKQVSPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G456700
[exp]
0 1
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.016G134200
[exp]
4.24 0.7830
AT1G02180 ferredoxin-related (.1) Potri.014G044500
[exp]
6.70 0.7701
AT1G68410 Protein phosphatase 2C family ... Potri.008G123600
[exp]
7.34 0.8115
AT4G03965 RING/U-box superfamily protein... Potri.002G224200
[exp]
14.42 0.8087
AT1G76520 Auxin efflux carrier family pr... Potri.011G145600
[exp]
16.79 0.7917
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Potri.001G116500
[exp]
20.00 0.7316 SMO1.2
AT5G22930 Protein of unknown function (D... Potri.008G032500
[exp]
32.90 0.7512
AT1G79760 DTA4 downstream target of AGL15-4 (... Potri.001G189400
[exp]
33.76 0.7873 DTA4.1
AT2G02170 Remorin family protein (.1.2) Potri.010G098000
[exp]
35.25 0.7666
AT5G59350 unknown protein Potri.001G238300
[exp]
37.04 0.7080

Potri.001G456700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.