Plant FIBer expression Database

Potri.001G456800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17420 582 / 0 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
AT4G35460 556 / 0 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1)
AT2G41680 348 / 2e-116 NTRC NADPH-dependent thioredoxin reductase C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G145100
[exp]
651 / 0 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Potri.006G049100
[exp]
337 / 2e-112 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006853
[exp]
546 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Lus10025845
[exp]
457 / 6e-163 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10038256
[exp]
456 / 8e-163 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10018051
[exp]
338 / 2e-113 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Lus10042048
[exp]
336 / 5e-111 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Lus10037596
[exp]
253 / 1e-84 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10019550
[exp]
211 / 6e-68 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10038255
[exp]
135 / 1e-38 ND 115 / 7e-32
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence
>Potri.001G456800.1 pacid=42791477 polypeptide=Potri.001G456800.1.p locus=Potri.001G456800 ID=Potri.001G456800.1.v4.1 annot-version=v4.1
ATGAATCAAACATCCAGCAGACTAAAATCCCTCCTCTTTAAAGCCCGCAATTTCATAGGCATAGCCACCACGTCCATCGTCGCCGCTTCCTTCTCCACCA
CGTCCACTCCTAAAATAACCACCGCAACCTTCACCGCCATGGAAGAGCTCAAGACCCGTGTCTGCATAATCGGAAGCGGACCCGCGGCACACACTGCAGC
GATCTATGCCTCTCGAGCTGAGCTAAAACCCATCTTGTTTGAAGGTTGGATGGCAAATGATATCGCCCCCGGCGGCCAGCTTACGACCACAACTGACGTG
GAAAACTTTCCTGGTTTTCCTGAAGGAATAATGGGGGGTGATCTGACCGAGAAGTTCCGGGCTCAATCCGCCCGTTTTGGGACCCAAATCTTTACTGAAA
CGGTTACTAAAGTGAATTTTTCGAAAACCCCATTTGAGGTTTTCACTGATTCTAAACGTGTCGTTGCTGATTCGGTTATTGTTTCTACCGGGGCGGTGGC
GAAGAAGCTGAGTTTTGCAGGGTCGGAAACGTTTTGGAATAGAGGAATTTCGGCTTGCGCGGTGTGTGATGGGGCTGCGCCTATTTTTAGGGAGAAGCCA
TTGGCTGTGATTGGAGGAGGGGATTCCGCAATGGAAGAAGCGAATTTCTTGACCAAGTATGGATCTAAGGTTTATATTATTCACAGGAGGGATACATTTA
GGGCTTCTAAGATAATGCAAAGTAGGACGTTGTCGAATCCGAAGATCGAGGTCATTTGGAATTCTGTAGTGGAGGAGGCTTATGGAGAGAGGGTTGTAGG
TGGGCTTAAAGTGAAGAATGTGGTTACTGGGGAGGTTTCGGATTTGAAGGTTAATGGGTTGTTTTTTGCTATTGGACACGAGCCTGCTACTAGGTTTTTG
GATGGGCAGTTGGAGCTGGATTCTGATGGGTATGTTGCGACTAAACCGGGGACTACAAAGACTAGTGTTCGTGGGGTTTTTGCTGCTGGTGATGTTCAGG
ATAAGAAGTACAGACAGGCTATTACTGCTGCTGGCACTGGCTGCATGGCAGCGCTAGATGCAGAGCATTACTTGCAAGAGATTGGATCCCAAGAGGGCAA
AAGTGATTGA
AA sequence
>Potri.001G456800.1 pacid=42791477 polypeptide=Potri.001G456800.1.p locus=Potri.001G456800 ID=Potri.001G456800.1.v4.1 annot-version=v4.1
MNQTSSRLKSLLFKARNFIGIATTSIVAASFSTTSTPKITTATFTAMEELKTRVCIIGSGPAAHTAAIYASRAELKPILFEGWMANDIAPGGQLTTTTDV
ENFPGFPEGIMGGDLTEKFRAQSARFGTQIFTETVTKVNFSKTPFEVFTDSKRVVADSVIVSTGAVAKKLSFAGSETFWNRGISACAVCDGAAPIFREKP
LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDTFRASKIMQSRTLSNPKIEVIWNSVVEEAYGERVVGGLKVKNVVTGEVSDLKVNGLFFAIGHEPATRFL
DGQLELDSDGYVATKPGTTKTSVRGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17420 NTR2, ATNTRA, N... NADPH-DEPENDENT THIOREDOXIN RE... Potri.001G456800
[exp]
0 1
AT2G20420 ATP citrate lyase (ACL) family... Potri.014G195700
[exp]
2.44 0.8881
AT3G26340 N-terminal nucleophile aminohy... Potri.010G058100
[exp]
3.46 0.8701 PBE1.1
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.004G176600
[exp]
7.48 0.8454
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.017G092400
[exp]
10.48 0.8769
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.006G225700
[exp]
15.29 0.8570 TIF4.1
AT5G57300 S-adenosyl-L-methionine-depend... Potri.018G088400
[exp]
18.00 0.8617
AT1G80230 Rubredoxin-like superfamily pr... Potri.001G173800
[exp]
18.73 0.7829
AT3G04830 Protein prenylyltransferase su... Potri.005G051300
[exp]
21.21 0.8088
AT1G61790 Oligosaccharyltransferase comp... Potri.011G025700
[exp]
21.81 0.8004
AT1G26750 unknown protein Potri.010G165500
[exp]
22.09 0.8032

Potri.001G456800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.