Plant FIBer expression Database

Pt-HMGR3.1 (Potri.001G457000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-HMGR3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76490 834 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
AT2G17370 756 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G145000
[exp]
1007 / 0 AT1G76490 845 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Potri.002G004000
[exp]
885 / 0 AT1G76490 908 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Potri.005G257000
[exp]
861 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Potri.009G169900
[exp]
843 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Potri.004G208500
[exp]
840 / 0 AT1G76490 808 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013850
[exp]
722 / 0 AT1G76490 740 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Lus10026567
[exp]
718 / 0 AT1G76490 737 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00368 HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence
>Potri.001G457000.1 pacid=42793105 polypeptide=Potri.001G457000.1.p locus=Potri.001G457000 ID=Potri.001G457000.1.v4.1 annot-version=v4.1
ATGGACAGACATGCCGGCGAACCCGCCCTGAAACCATACCTTCGTCACCACCATGATCATCATGATTTACAGCCTCCGACGTCTGTAAAGGCATCGGATG
CACTCCCATTACCTCTTTACTTAACAAATGGTTTATTCTTCGGGCTATTTTTCTCCGTCGCCTACTTCCTGCTCCATCGTTGGCGCGAAAAGATCCGAAA
CTCCACTCCCCTTCATATCATCACTTTCCCTGAAATCGCTGGGATAGTATGTTTGGCTGCTTCGGTTATTTATCTTCTTGGTTTCTTTGGGATTGGCGTT
GTTCAATCTTTTATCTCTCGAGGGTCTAATGATTCTTGGGATGTTGAGGAAGATAATAATGTTATGATCAAGAAAAATGGTATCGGTTGCACTCCTGCAG
AATCACTTGCATGCACTCTTGCCCCTGTTTCGAGGGAAAGAGTTGTTGCACCAACGATTCAAGAACCATTAATTTTATCAGGTGACGACGAGGAGGTTAT
CAAAGGAGTGGTATCTGGGACTATTCCTTCGTATTCTCTTGAATCAAAGCTTGGAGATTGCAAAAGGGCAGCTGCTATTCGGCGTGAAGCGCTTCAGAGG
ATGACAGGGAGGTCTATGGAGGGATTGCCATTAGAAGGGTTTGATTATGAGTCAATATTGGGGCAGTGTTGTGAGATGCCTGTCGGGTTTGTACAGATTC
CTGTGGGAATTGCTGGGCCATTGTTGCTTAATGGGACGGAGTATATGGTCCCAATGGCTACGACTGAGGGGTGCTTGGTGGCCTCTACAAATAGAGGGTG
CAAGGCTATTTATGCATCAGGTGGGGCTAGTTCTATGTTGCTTAAAGATGCCATGACTAGAGCTCCTGTTGTCAGGTTTGGGACCGCAAAAAGGGCTGCT
GAGTTGAAGTTCTTTGTTGAGGATCCTGCTAATTTCGACACTCTTTCTGTTGCTTTCAACAGGTCAAGCAGATTTGGAAGGCTACAAAACATTAAATGTG
CAGTGGCAGGAAAGAATTTGTACATGAGGTTTAGTTGCAGCACAGGTGATGCTATGGGAATGAACATGGTCTCCAAAGGAGTCCAAAATGTTCTTGATTA
TGTTCAAACAGATTTTCCTGACATGGACATCATTGGCATCTCTGGCAACTTCTGTTCAGACAAGAAACCTGCAGCTGTAAATTGGATTGAAGGGCGTGGA
AAGTCAGTTGTATGTGAGGCAATCATAAAGGAAGAGGTGGTTCAGAAGGTACTGAAGACCAATATAGATACCTTGGTGGAGCTTAACATGCTTAAGAACC
TTGCAGGTTCAGCTATGGCTGGTGCTCTCGGTGGGTTTAATGCCCATGCCAGCAATATTGTCAGTGCAGTCTATATAGCCACAGGACAGGATCCTGCTCA
GAATGTTGAGAGCTCTCACTGCATTACTATGATGGAAGCTGTTAATGATGGAAAGGACCTTCATATCTCAGTCACCATGCCTTCCATTGAGGTGGGCACA
GTTGGAGGTGGCACCCAACTAGCATCTCAATCAGCTTGCTTGAACCTGCTTGGAGTAAAGGGCGCAAGCAAAGATTCTCCAGGATCAAACTCAAGACTCT
TGGCTACTATCGTTGCTGGTTCTGTTTTGGCAGGAGAGCTGTCCCTCATGTCTGCAATTGCAGCTGGTCAGCTTGTAAAGAGCCACATGAAATACAACAG
ATCAAGCAAAGATGTGTCAAAGATAGCTTCCTAA
AA sequence
>Potri.001G457000.1 pacid=42793105 polypeptide=Potri.001G457000.1.p locus=Potri.001G457000 ID=Potri.001G457000.1.v4.1 annot-version=v4.1
MDRHAGEPALKPYLRHHHDHHDLQPPTSVKASDALPLPLYLTNGLFFGLFFSVAYFLLHRWREKIRNSTPLHIITFPEIAGIVCLAASVIYLLGFFGIGV
VQSFISRGSNDSWDVEEDNNVMIKKNGIGCTPAESLACTLAPVSRERVVAPTIQEPLILSGDDEEVIKGVVSGTIPSYSLESKLGDCKRAAAIRREALQR
MTGRSMEGLPLEGFDYESILGQCCEMPVGFVQIPVGIAGPLLLNGTEYMVPMATTEGCLVASTNRGCKAIYASGGASSMLLKDAMTRAPVVRFGTAKRAA
ELKFFVEDPANFDTLSVAFNRSSRFGRLQNIKCAVAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDYVQTDFPDMDIIGISGNFCSDKKPAAVNWIEGRG
KSVVCEAIIKEEVVQKVLKTNIDTLVELNMLKNLAGSAMAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGT
VGGGTQLASQSACLNLLGVKGASKDSPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSKIAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.001G457000
[exp]
0 1 Pt-HMGR3.1
AT1G67050 unknown protein Potri.017G115801
[exp]
1.73 0.9283
AT1G07300 josephin protein-related (.1) Potri.001G249500
[exp]
1.73 0.9222
AT1G19020 unknown protein Potri.015G070700
[exp]
2.00 0.8905
Potri.009G152101
[exp]
5.47 0.8852
AT1G65520 PEC11, ECHIC, A... "delta\(3\), delta\(2\)-enoyl ... Potri.010G207800
[exp]
5.65 0.8682
AT2G27140 HSP20-like chaperones superfam... Potri.009G153100
[exp]
7.93 0.8784
AT3G26320 CYP71B36 "cytochrome P450, family 71, s... Potri.008G184900
[exp]
8.24 0.8657
AT1G20190 ATHEXPALPHA1.14... EXPANSIN 11, expansin 11 (.1) Potri.005G244100
[exp]
10.00 0.8782 Pt-ATEXPA11.1,PtrEXPA18
AT5G57420 AUX_IAA IAA33 indole-3-acetic acid inducible... Potri.018G092300
[exp]
10.72 0.8579
AT2G45600 alpha/beta-Hydrolases superfam... Potri.001G466300
[exp]
11.91 0.8143

Potri.001G457000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.