Plant FIBer expression Database

Potri.001G457201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65950 746 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G144700
[exp]
775 / 0 AT5G65950 1512 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041289
[exp]
840 / 0 AT5G65950 1410 / 0.0 unknown protein
Lus10037422
[exp]
665 / 0 AT5G65950 1312 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF11817 Foie-gras_1 Foie gras liver health family 1
Representative CDS sequence
>Potri.001G457201.2 pacid=42791217 polypeptide=Potri.001G457201.2.p locus=Potri.001G457201 ID=Potri.001G457201.2.v4.1 annot-version=v4.1
ATGTTAGCTGCACGCTACTTGAAGGAGAAGAGATCTTCTTTGGAACTTTCATTGACAATGTCAGAAACTGCAGATGAAATTGACAGTGATGCTGAATCTG
TAGTGCCTTCTATTTATGTGGGTCAGTTTGCTCAATTACGAGTCTTCAAAATGTTTGCTTTGCACTATGTTGTTCATTCAATCTGCAACCTAACCGATGA
AGAGTACACTCGTTATGCTTTTACTGAAGGGAAAAGATTTCAAGATTCCTTTGAAATTGTAGCTTTTCTTAAAAAAGCTTATGAATCATTCTCTAATCTA
AAAGCCCAGAGGATGGCCTGCTTCTGTGGGTTCCACATGGCAAGGGAATACTTTGTTGTGGGTGATTTTAGAAATGCAAAACAATTACTTGATGGTGTTG
CTCTTCTATACAGACAAGAGGGTTGGGCCACTTTATTGTGGGAGTTCTTGGGTTATCTGCGAGAGTGCTCGAGGAAATGTGGTACAGTGAAAGAGTTTGT
TGAGTACTCTCTTGAATCGGCAGCATTGCCAGTGCCATCTGATTCTGGGATCCAGTCTTTCAGGCGCAAAGAATGTGGCCCAGCTGGTCCCGCAATTCTT
GCACAGAGAGAGATTATACACAAGGAGGTTTTTGAGCTTCGTAGTGGAGAAACCAGGTTAGCATCAGTTGAAGGCAATACTGATCTCAAAGTGAATGAAG
AAAATCCTCTGCGTCTTGAGATTGATCTAGCCAGCCCCCTTAGATTGGTACTTCTTGCTTTAGTTGCTTTTCATGAACCAATGTTTAAGCCAAGGATTGA
ACATTTGGAACTTTTTATCATGCCTCCTCTTCTTGTACAAGGAATTCCTTGCGGTATGATTAAACAAAGTGGGAAGCTGGAGTGCATATATGTTATTGCA
AAAATGAGACCCCACTTCTTAATCTGTTGTGGGGCTGAAAGTCCTGCTTCAATGGAGGATTTACCTCTTTGGAAGTTTGAGGACCGTGTCGAAACTTTTT
CAACCAAGGATCCTGCTCTTGCATTTTCTGGTCAGAAGGCTGCCCAGGATCATGCCATATTCTCCGTCGAGTTAAAAATCAATCTGGTCGATGTAAAAGG
AGGTGGGCTGTATAGTCCAAGGGAAGAAGAACCATTCTCTACGGAGAGCCATCATGTTGAACTTCTTGGAGTTACTGGGCCAGAAGGAGAAGATGAAACT
CTAGTGGGTCCTGACAAAATCAAGAAAATTCAGCAGTCTTTTGGTTTGGTTTCTGTTCCTTTTTTTAAAAGATGGCGAATCATGGTCCTGCAAATTAGAA
TTAAGTGGCATCGACCCAAACCAGTTATGCTCTTTGTATCATTAGGCTATTTTCCAGATAGCAATGAATCAACTTCACAAAGAATCCATGTCCACAAGAG
CTTGCAAATTGAAGGAAAGACTGCTGTTGTGTTTCGCCATCAGTTTATGCTGCCATTCCGCCAGGATCCACTTTTGCTCTCAAGAAGAATCAAGCCTGTT
CCTGGCTCTGATCAGTTGGCATCACTTCCTCTGAATGAAACTAGTATACTAGTTATTAGTGCCAAGAACTGCAGTGAGGTGCCATTGCTGTTGCAGTCAA
TGTCTATTGAAGTGGATGATTGCATTGAAAGGCCATGTACCCTGGAACATAGTGGCATGGATATTTTACATCCTGCCCATCTTGTTCCAGGAGAAGAGTT
CAAAAAGATTTTCACTGTCATTCCTGAAGTGGAATCTTCATGTCTTGATTTGGGGTCATTGTCATTGAGATGGAGGAGAAATTCTGAAATGGAAGATCTA
TCTACTTCTGCTGCCACACAAGAGTGGGTTTTGACCAAACATAAACTTCCAGATGTAAAAGCAGAGTTGCCACCATTGGTATTGAATCTGGAGTTTCCTC
CTTATGCTGTTCTTGGAGATCCCTTAATGTACTCGGTTAAAATTCGGAATCAAACACGATTGCTTCAAGAGGTCAAGTTCTCACTAGGAGATGCACAGGG
TTTTGTGTTATCTGGGTCTCACAGCGACACAGTTATTGTTCTTCCAAAATCTGAGCACGCACTTAACTACAAGCTTGTGCCATTGGCTTCAGGTCCACAA
CAATTGCCTCAAGTTACAATGATCTCGGCAAGATATTCAGCTGCATTTCAACCTTCCAATGCTGCATCTACTGTTTTTGTCTTCTCCTCTAAACCTCAGT
TCAAGACAACTGATATCAGAGACAACAAATCGGAACCCGTTGCTGCCGAGTAA
AA sequence
>Potri.001G457201.2 pacid=42791217 polypeptide=Potri.001G457201.2.p locus=Potri.001G457201 ID=Potri.001G457201.2.v4.1 annot-version=v4.1
MLAARYLKEKRSSLELSLTMSETADEIDSDAESVVPSIYVGQFAQLRVFKMFALHYVVHSICNLTDEEYTRYAFTEGKRFQDSFEIVAFLKKAYESFSNL
KAQRMACFCGFHMAREYFVVGDFRNAKQLLDGVALLYRQEGWATLLWEFLGYLRECSRKCGTVKEFVEYSLESAALPVPSDSGIQSFRRKECGPAGPAIL
AQREIIHKEVFELRSGETRLASVEGNTDLKVNEENPLRLEIDLASPLRLVLLALVAFHEPMFKPRIEHLELFIMPPLLVQGIPCGMIKQSGKLECIYVIA
KMRPHFLICCGAESPASMEDLPLWKFEDRVETFSTKDPALAFSGQKAAQDHAIFSVELKINLVDVKGGGLYSPREEEPFSTESHHVELLGVTGPEGEDET
LVGPDKIKKIQQSFGLVSVPFFKRWRIMVLQIRIKWHRPKPVMLFVSLGYFPDSNESTSQRIHVHKSLQIEGKTAVVFRHQFMLPFRQDPLLLSRRIKPV
PGSDQLASLPLNETSILVISAKNCSEVPLLLQSMSIEVDDCIERPCTLEHSGMDILHPAHLVPGEEFKKIFTVIPEVESSCLDLGSLSLRWRRNSEMEDL
STSAATQEWVLTKHKLPDVKAELPPLVLNLEFPPYAVLGDPLMYSVKIRNQTRLLQEVKFSLGDAQGFVLSGSHSDTVIVLPKSEHALNYKLVPLASGPQ
QLPQVTMISARYSAAFQPSNAASTVFVFSSKPQFKTTDIRDNKSEPVAAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65950 unknown protein Potri.001G457201
[exp]
0 1
AT1G77680 Ribonuclease II/R family prote... Potri.005G174800
[exp]
2.82 0.8052
AT3G52570 alpha/beta-Hydrolases superfam... Potri.016G076601
[exp]
4.69 0.7285
AT2G24230 Leucine-rich repeat protein ki... Potri.006G185100
[exp]
6.24 0.7715
AT5G60390 GTP binding Elongation factor ... Potri.016G086500
[exp]
6.92 0.7452
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.002G010600
[exp]
6.92 0.7666
AT3G02630 Plant stearoyl-acyl-carrier-pr... Potri.008G077900
[exp]
9.48 0.7309
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Potri.010G241800
[exp]
10.95 0.7163
AT4G35830 ACO1 aconitase 1 (.1.2) Potri.015G130201
[exp]
11.40 0.7805
AT4G28700 AMT1;4 ammonium transporter 1;4 (.1) Potri.002G255100
[exp]
18.49 0.6635 4
AT2G45730 eukaryotic initiation factor 3... Potri.005G238200
[exp]
20.14 0.6632

Potri.001G457201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.