Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 712 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 360 / 3e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 332 / 2e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 235 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 234 / 5e-69 RPF2 rna processing factor 2 (.1) AT1G12620 234 / 5e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 234 / 5e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 233 / 1e-68 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12300 231 / 7e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 228 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144300 [exp] 1013 / 0 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 361 / 6e-118 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 307 / 4e-97 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 302 / 4e-95 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019200 [exp] 253 / 3e-76 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 242 / 2e-71 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 239 / 6e-70 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 233 / 1e-68 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 231 / 5e-68 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031215 [exp] 598 / 0 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031792 [exp] 592 / 0 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031216 [exp] 498 / 9e-172 AT1G79080 479 / 3e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031791 [exp] 419 / 5e-141 AT1G79080 406 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031793 [exp] 388 / 1e-130 AT1G79080 387 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 253 / 2e-76 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 246 / 6e-74 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012037 [exp] 238 / 3e-70 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022025 [exp] 230 / 3e-68 AT1G08610 507 / 2e-175 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 230 / 1e-67 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G457300.2 pacid=42791793 polypeptide=Potri.001G457300.2.p locus=Potri.001G457300 ID=Potri.001G457300.2.v4.1 annot-version=v4.1 ATGGCAACTCTGGTGAATTCAGTGTCTCCTTTAACAAACCCTTCTCCGGAGACTCTAAGAACAGCTTGTGGGTTATTCTCTAATGTCCCAAATTTCCGTT CTTTTTCGCAAAACAAAGGTTTCACTAGAGTTTTGGCATCAACCCATATTACAATTTCCCCTAAAGACTCTGTTTGGACACTGTCCAATTGGAAGGTTGG TAGGAAGGACACAAGAAATAGGGATATTAGGCTCAATGATGCATTTTTTCATTTGGAGTTTATTGTTAGAAAGGGTCATAAACCTGATGTTGCTCAAGCA ACACAGCTGTTGTATGATTTGTGCAAGTCGAATAAGATGAAGAAAGCGACGAGGGTGATGGAAATGACGATTGAGTCTGGTATTATTCCTGATGCAGCTT CTTATACTTTTTTGGTGAACAATTTGTGTAAGAGAGGGAATATTGGGTATGCAATGCAGTTAGTTGAGAAAATGGAGGAAAATGGCTGTCCAACCAATAC GGTTACCTATAATTCGCTTGTTAGAGGGCTTTGCAAGCATGGAAACTTGAATCAAAGCTTGCAGTTACTAGATAAGCTGATGCGAAAGGGGTTGGTCCCA AATGAATTCACTCATTCTTTCTTGCTAGAAGCAGCTTACAAGGAGAGAGGTGTGGATGAAGCGATGAAGCTTTTGGATGGGATAATTGCAAAGGGCGGGA AGCCTAACTTGGTTAGTTACAATGTTTTATTAACTGGATTGTGCAAGGAAGGTAGGACGGAAGAGGCAATTCAGTTCTTCAGGGATTTGCCATCAAAGGG ATTTAATCCGAATGTTGTGAGCTGTAATATTATACTGAGGAGCTTGTGCTGTGAAGGAAGATGGGAAGAGGCAAACGAGCTTGTAGCTGAAATGGACTCG GAGGAGCGTTCACCATCTCTGGTCACATACAATATACTAATTGGTTCACTTGCCTCCCATGGCAGGATTCAACATGCATTTCAGGTTTTGGATGAAATGA TGAGGGCATCATTTCAGCCCTCTGCTGCAACCTTCAATCCTATAATTTCTCATCTTTGCAAAGAGGGGAAGGCAGACCTTGTGGTTAAGTGTCTAGATCA AATGATTCATCACTGCTGTAATCCCAATGATGGAACGTTTAATGCCATTGCTGTGCTCTGTGAGGGGGGAAGGGTGCAACGGGCATTCTCCATAATTCAA AGCTTGGGTAATAAGCAAAATTCATCTACCCATGACTTCTACAGAGGTGTGATTTCGAGCTTGTGTAGAAAAGGGAACACATATCCAGCATTTCAGCTTT TATACGAGATGATACAGTCTGGATTTGTTCCTGATCCTTATACCTATTCATCTTTGATTAGAGGATTGTGTGTTGAGGGAATGCTAGACGAGGCCTTGGA GATTTTCAGGCTATTGGAAGAAAATGACTATAGGCCTATTCTTGGCAATTTCAATGCTCTTATACTTGGGTTTTGTAAATCTGGTCGAACAGATTTGTCC TTGGAGATTTTTGAGATGATGATTTTGAAAGGATACACACCTAATGAAACAACTTATACTATTTTAGTAGAAGGGATTGCCCATGAAGAAGAAAAGGAGT TGGCAGCAGAAGTTTTAAAAGAGTTGTACATTAGACAAGTCATGAGACGAAATACAGTAGAAAGACTTGTTATGCAATACGACCTCAAGGGTTTACCGGT ATAA
AA sequence Show only first row Show all	>Potri.001G457300.2 pacid=42791793 polypeptide=Potri.001G457300.2.p locus=Potri.001G457300 ID=Potri.001G457300.2.v4.1 annot-version=v4.1 MATLVNSVSPLTNPSPETLRTACGLFSNVPNFRSFSQNKGFTRVLASTHITISPKDSVWTLSNWKVGRKDTRNRDIRLNDAFFHLEFIVRKGHKPDVAQA TQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVP NEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVVSCNIILRSLCCEGRWEEANELVAEMDS EERSPSLVTYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNAIAVLCEGGRVQRAFSIIQ SLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGFVPDPYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGRTDLS LEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEVLKELYIRQVMRRNTVERLVMQYDLKGLPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	1.41	0.9909
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	2.00	0.9815
AT1G73885			unknown protein		Potri.015G053800 [exp]	2.44	0.9876
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	3.00	0.9847
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	3.16	0.9770
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.002G153800 [exp]	3.16	0.9811
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	3.60	0.9757	CRY1.1
AT3G56010			unknown protein		Potri.010G186800 [exp]	4.24	0.9792
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	4.24	0.9773
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	4.47	0.9714

Compare expression of checked genes

Potri.001G457300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.