Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04390 433 / 6e-137 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077000 [exp] 48 / 2e-05 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 47 / 4e-05 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.008G150100 [exp] 44 / 0.001 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027380 [exp] 706 / 0 AT1G04390 252 / 4e-71 BTB/POZ domain-containing protein (.1) Lus10002545 [exp] 435 / 4e-132 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002546 [exp] 307 / 5e-97 AT1G04390 233 / 3e-71 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 47 / 3e-05 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 45 / 0.0001 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.001G457550.1 pacid=42791426 polypeptide=Potri.001G457550.1.p locus=Potri.001G457550 ID=Potri.001G457550.1.v4.1 annot-version=v4.1 ATGAGATCTTCAAAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAGAGAACAACAGAGGCATAAGCGGTCACATGTTCACTCTCCATCAACGTCTCT ATCATGCTCTCAACCTCGGTACCAGATATTCTGAAGGAAAAGAGTGGAAATGGAAGTGTACAGATATTGAAATCCAACGGCATGTCGTCCGCTCCATTTC TTCCTTCATTGAGTCTGCCTCGCCAGACACTTTACATCATCCTCTTGTTAAGGATTCCGTGGCCGATATAGTTTGGGCATTGGTATGGATTCTTCAACAT AAAAGTGAGGCTGTATTGAGTATAGCAGCAAATGTGGTTGTAAAGTTGATCCGCATTATACCCAATTCAATACTGCAACCATATTCATTGTATCTGGTTC ACCCTCTAGCATCCTTGCTATCTTCCTGTCGAATGGAAGTCTCAATTGCTTGTGCCACTGCTTTGAATATGATTCTCTCGAATCTGAGTGCAACCAGGGA GAAAAGTGTTTGGGAGATTCTGAGTGAAACAAAAACTGTTTTCCTTATTGTTAGTGGTATACGGGAATTTTCTGGTGGTCCTATGTCTACTGAATATTTC CAAGAGATGGCTTCTCTTTTGAGTACAATACTGCAAAAGTGGTCTGCTTCTCGGTTCTCTGTCTGGAATGATACTAAATTGATGGAAGTTCTAGAGGCTA TGCACGAAAATCCTGATGTTTCCATTAAGGTTGCACTTTTGAAGTTATATTCAGGGATAGCTCTATGTGGTAATGGGGCCATGAAGCTTCTTCAAAATGG GGAAGCCCTTCTACAAATGATGGTTCTCTGCATGGGTAGATCCCGCCCTCTTTCTGTTCAGATGGAAGGATTTAGACTTGCCCAACGCTTAGCGACAAAT AAACAGGGATGTTTAAAAATGCTGAGCTTATGCTGCGAGCCTATTGTTAAAGCTATAATTGATGGAATGACTGGATGGACCTTGAGCTCGGGGAAGATTG CAAATGACCAGATGTCTTTGTTAGTGGAAGCTTGTCGCTTGGCTCTTATAATTCGCTGGGATGGGGAACATCATGATTATTTTTGGAAGAAAGGAATTGA CAAGGTCCTACTTGATCTTCTTCTTGAAAAGTTTCAGAATGGACAGTCTGTACACCTTTTGACACTTGAAGAACAGATGTCTGAAGCACAGGAGGCTCTC AATGCTGATGTTCTTCTTGTTTTGAGGCCATACATGTGGGATATTCTCGGATGGCTGGCAATAAACTGTAGGGAAGATTTCAACCCCAACATTCATAGTC ATGAACTTCTCATTGATATGCTTATTAGATGTGCATGCTTAACTTTTACGGATTTAGTTCGTAAAGGATGGCAAATATGCCAAAGTGATCTGTCCGAGAC GTTCAGAAGTGAATCAGCATCAAGGGCAGTTCTTATGATGATTTATTCTCCCTGCAAATACATTGCATCAAAAGCCAGGTCTATGCTGTCTGAAATTCTA AAGCCAACTGGCAAGGAATATTTGAAACACTCGTTGCGCGTTCTCAATTTTACATTGACAAGGGATAATTTTGGAATACCAGATATGCTTCAAACTGGCA TAAACTTGGTGGCTTTGACATGCTGTGCTTGTTTGCCATGGTACCGAAGTTACATTGTTAAAAGTGAAGGAGTAAAGACACTACTGGCTTTTATAAAGTG GTGCCTAAGCAATGATGTCCATATAGGAAGGCTGAGCTTTGCTCCTCATTTGCATAATATATTCAGTCAGAGGCTTTGTTGTTGGGTGTGCAAGGAAGAC TGGGAAGGCAATGACATACTTTTATTGTATGGGTTGTGGGGGCTAGCTGAGTTACTACACTATGGATCTATAAGCAAAAATGTTGACATTTTTTCTGGCC AGGTGGAATATACTGAAGCTCAGTTTGTTAGAATGCTTCAGGAAATTTGCAGTGACAACTCTGCTCTTGGGCTGAAATGGAATGCTGCATACATTCTAAG TTACTTTGGATTTTATGGTTTTCCTTGTAAACTTGGGAGGCGTATAGGGAAGGCACTTGATGAGAATGAATTTGCAGATACACGAATCATCCTCGCAAAA GGGGAGTCTATGAGTGTTCATGGTGTCGTTCTTGCCATTCGATGTCCATCATTGCTGCCTCCTGAAGAATTATCTCATGATGAGAAAGCATCTGGTGGTT CTTCTTATCTTCACACATTTAAGAAAGATATTCGCTTATCTTCACACGTTGATAACCAGGCACTGTCCAAGTTGTTGGAATTTGTTTACTTAGGATATCT GCATGCCGGTGATGAACATGTGAAGAAATTGAAGATTCTTGCTAAACATTGTAGTTTGCAACCTCTATCAACAATGCTTGGCAGAAGACGTCCAAAGTGG GGCACTCTTTTCCCCATCTATGATCTTACCCCTGCTCTTGCTCCGACTGGGCATCACTTTTCGGACATCATTTTGAAGCCAAAAGAAACTGAATCAATCT GCTGGAAATGTAGAACGTGCTCCCTGTCATTGCCGCACATGCATGCTCACAAAGTTGTATTGTCATCTAGTTGTGATTATTTGCGGGCTTTGTTTCAATC AGGCATGCGAGAGAGTCGCTCCCAAACCATAGAGGTTCCTGTCAGTTGGGAGGCAATGATTAAGCTAGTGAACTGGTTCTACACTGATGAGTTGCCTAAA CCTCCCTCTGGTTGTTTATGGGATAATATGGATGATGAGGAAAAGCTACATCAGCTGCAACAATATCTGGAGCTTTGCTGGCTAGCTGAATTCTGGTTTT TGGAAGACGTTCAGGATATCAGCTACAAAGTGATTGTATCTTGTCTGGATTCAGCCAGACAGCTGTCTATTAAAATAATCAAGATTGCTTCAGAGTTATC TCTTTGGAAATTGGCTGAAGTTGCTGCAAATTACCTTGCCCCTTTCTATCGTCAACTATGCCACACAGGTGATCTTGAAGCACTGAATGAAGAGCTAGTT GATATGATTCGTGATGCCTCTGTTCGGCTTTCTCAAGAAGGGTAG
AA sequence Show only first row Show all	>Potri.001G457550.1 pacid=42791426 polypeptide=Potri.001G457550.1.p locus=Potri.001G457550 ID=Potri.001G457550.1.v4.1 annot-version=v4.1 MRSSKQAAAAAAAAATENNRGISGHMFTLHQRLYHALNLGTRYSEGKEWKWKCTDIEIQRHVVRSISSFIESASPDTLHHPLVKDSVADIVWALVWILQH KSEAVLSIAANVVVKLIRIIPNSILQPYSLYLVHPLASLLSSCRMEVSIACATALNMILSNLSATREKSVWEILSETKTVFLIVSGIREFSGGPMSTEYF QEMASLLSTILQKWSASRFSVWNDTKLMEVLEAMHENPDVSIKVALLKLYSGIALCGNGAMKLLQNGEALLQMMVLCMGRSRPLSVQMEGFRLAQRLATN KQGCLKMLSLCCEPIVKAIIDGMTGWTLSSGKIANDQMSLLVEACRLALIIRWDGEHHDYFWKKGIDKVLLDLLLEKFQNGQSVHLLTLEEQMSEAQEAL NADVLLVLRPYMWDILGWLAINCREDFNPNIHSHELLIDMLIRCACLTFTDLVRKGWQICQSDLSETFRSESASRAVLMMIYSPCKYIASKARSMLSEIL KPTGKEYLKHSLRVLNFTLTRDNFGIPDMLQTGINLVALTCCACLPWYRSYIVKSEGVKTLLAFIKWCLSNDVHIGRLSFAPHLHNIFSQRLCCWVCKED WEGNDILLLYGLWGLAELLHYGSISKNVDIFSGQVEYTEAQFVRMLQEICSDNSALGLKWNAAYILSYFGFYGFPCKLGRRIGKALDENEFADTRIILAK GESMSVHGVVLAIRCPSLLPPEELSHDEKASGGSSYLHTFKKDIRLSSHVDNQALSKLLEFVYLGYLHAGDEHVKKLKILAKHCSLQPLSTMLGRRRPKW GTLFPIYDLTPALAPTGHHFSDIILKPKETESICWKCRTCSLSLPHMHAHKVVLSSSCDYLRALFQSGMRESRSQTIEVPVSWEAMIKLVNWFYTDELPK PPSGCLWDNMDDEEKLHQLQQYLELCWLAEFWFLEDVQDISYKVIVSCLDSARQLSIKIIKIASELSLWKLAEVAANYLAPFYRQLCHTGDLEALNEELV DMIRDASVRLSQEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	0	1
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.014G165600 [exp]	4.00	0.7381
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	4.24	0.7787
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	4.89	0.7805
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	4.89	0.7936
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	5.38	0.8037
AT2G28540			RNA binding (RRM/RBD/RNP motif...		Potri.016G084700 [exp]	6.63	0.7574
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	7.93	0.7786
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	11.74	0.7836
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	17.43	0.6850
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	17.88	0.7787

Compare expression of checked genes

Potri.001G457550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.