Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22240 154 / 1e-40 APUM8 pumilio 8 (.1) AT5G56510 150 / 7e-39 APUM12 pumilio 12 (.1) AT1G78160 146 / 2e-37 APUM7 pumilio 7 (.1) AT1G35730 140 / 8e-36 APUM9 pumilio 9 (.1) AT5G09610 128 / 1e-31 APUM21 pumilio 21 (.1) AT1G35750 126 / 6e-31 APUM10 pumilio 10 (.1) AT5G60110 122 / 7e-31 APUM18 pumilio 18 (.1) AT4G08840 124 / 3e-30 APUM11 pumilio 11 (.1) AT5G60180 119 / 1e-29 APUM19 pumilio 19 (.1) AT5G59280 109 / 4e-26 APUM16 pumilio 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144000 [exp] 657 / 0 AT1G22240 155 / 3e-41 pumilio 8 (.1) Potri.001G002600 [exp] 151 / 8e-39 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G095400 [exp] 149 / 5e-38 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.003G222300 [exp] 147 / 2e-37 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G298000 [exp] 121 / 4e-29 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.014G020300 [exp] 119 / 1e-28 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.002G120900 [exp] 115 / 2e-27 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.008G036500 [exp] 91 / 8e-19 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 89 / 3e-18 AT2G29200 863 / 0.0 pumilio 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036469 [exp] 154 / 1e-40 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 151 / 3e-39 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10024793 [exp] 124 / 5e-30 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 123 / 9e-30 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10037976 [exp] 87 / 1e-17 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10034808 [exp] 84 / 1e-16 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10002708 [exp] 80 / 2e-15 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10038706 [exp] 79 / 3e-15 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 77 / 1e-14 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10016513 [exp] 77 / 2e-14 AT2G29190 1083 / 0.0 pumilio 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G457700.1 pacid=42788106 polypeptide=Potri.001G457700.1.p locus=Potri.001G457700 ID=Potri.001G457700.1.v4.1 annot-version=v4.1 ATGCCGCTCTATAAAACCAGGAGAGGCTTGTTTATTCATATTTGTGTTCTAATTCTTGTATTCTTTTCGGTATCCTCTTTTTCGATGGAGACATCTTCAG GTTCTTCTGATAACTCAATGTCTTCTGCTGCGCCTTCAGGTCCTTCTGTCAAAAACCTTATGCTTTCTGTCGCCAATCTTTCCTTGACAGAAGGGAGAAC TGGCACAAAAAACCGTCAGGGTTTTTCTCCAAGGAACTGCCTTTTGGCTGCTAATGGTGGTTCTTTACAAGGAATTCAAGAAACCAGGATTAATGGGTTA CCACAGTATCAGGCCGGGTTTGCGAAATCGACTCTAGTTCCACCGCCACTGTTTCCTGGAACTATCTGGGGATCAAACAGTATGGGCGATGGATGGGATT TCCAAGGTTCAAGATTGCAGTCCGGGGCAAAGAGTTTTGTTCCGAATTTAAACTACTCTCCGAGTGGTTCTGTCGTCGATGAGGGAGCAAGTATTGTTGG TTCTAACACAGGACTAAGTGATTACAGTGTGGTGAAGAATCAAGAAAAGCCTAACAACGTAAGGAACTTCATTTGTCTGCTTCAAGGAGATAGATTTGTC AACTATTGTTTAGACAAAGATGGTTCAAGAACACTTCATGGCTTATTGAGTTTGAGGGACCCAGAGATTACATGTCAGATATGCAAGAAAGTTTTGGACT TGTCATCAAGAGGAATCCCCATTTTTTTCGAGCTGATGCTTAATCAACATGGATGGCAAGTCTTTTCTGAGCTAATTGATTCATTGAATCATCAACAGTT GAAATTGATTACATATGTGATAACCAAGGACTTGTCCATTTTTATTGCATTGACATTCCACACACACGGTTCGAACTTGATAAAGAAGGTCATTAGAATA CTCAGGAGATCACATTTGATTTCGTTCGTGACCAACAATCTGTGTGCTGCGTTTCTTCTGATCATGACCAATCGGATAGGTTCGTATGTTGTATCGGAGT GCTTAAACCACCTGAGAGCTGAAGATAACAAGGCATTATATGAAGCAGCCATTACATGGTGTCTTGATTTAGCAATAGACCATGAAGGATCCATAGCCTT AATCAGGGTCATTAACACCATCCAAGGTCTGCAAAGATATCGGCTCCTGAATATCCTATCTAGAAATGCAGTATTCCTGTCGCAGGATCCGGAAGGGAAC TATGTGATTCAGAAGGTCATATCACTCAATAATCCTTTATTCACCCAAAATGTATGTCATCTCCTTATAGGCCATTATGAAACCATATCCTTGCAGAAAG GAGGCAGTCATATTGTCGAAAAATGCTTGGATACAGAGTGGAAGGGTTGGATAATTGAGAATTTTCTAAGCAACACCAACACACTATTGCATGTTGCTAA AGATGCATTTGGTAATTATGTGATCCAGAAAGCACTGAAAGTCACCAAGAAATCAGGCAGTCCACTCTACCACAAACTTTTGTCGCGCCTGAAGCCGCAT CTTAGCATTCTGCAGTCTGGATACGGAAGGAATGTCTTCAATTTGATCACCGGTGGACAGTCAGTTACGAAGGTGTAG
AA sequence Show only first row Show all	>Potri.001G457700.1 pacid=42788106 polypeptide=Potri.001G457700.1.p locus=Potri.001G457700 ID=Potri.001G457700.1.v4.1 annot-version=v4.1 MPLYKTRRGLFIHICVLILVFFSVSSFSMETSSGSSDNSMSSAAPSGPSVKNLMLSVANLSLTEGRTGTKNRQGFSPRNCLLAANGGSLQGIQETRINGL PQYQAGFAKSTLVPPPLFPGTIWGSNSMGDGWDFQGSRLQSGAKSFVPNLNYSPSGSVVDEGASIVGSNTGLSDYSVVKNQEKPNNVRNFICLLQGDRFV NYCLDKDGSRTLHGLLSLRDPEITCQICKKVLDLSSRGIPIFFELMLNQHGWQVFSELIDSLNHQQLKLITYVITKDLSIFIALTFHTHGSNLIKKVIRI LRRSHLISFVTNNLCAAFLLIMTNRIGSYVVSECLNHLRAEDNKALYEAAITWCLDLAIDHEGSIALIRVINTIQGLQRYRLLNILSRNAVFLSQDPEGN YVIQKVISLNNPLFTQNVCHLLIGHYETISLQKGGSHIVEKCLDTEWKGWIIENFLSNTNTLLHVAKDAFGNYVIQKALKVTKKSGSPLYHKLLSRLKPH LSILQSGYGRNVFNLITGGQSVTKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	0	1
AT3G11290			unknown protein		Potri.001G256500 [exp]	4.69	0.9939
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	10.81	0.9908
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	14.49	0.9697
					Potri.006G174801 [exp]	14.83	0.9890
					Potri.004G153850 [exp]	18.89	0.9532
AT5G05800			unknown protein		Potri.001G391600 [exp]	19.59	0.9808
					Potri.002G011650 [exp]	20.00	0.9533
					Potri.006G160950 [exp]	20.61	0.9807
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.014G056300 [exp]	21.81	0.9780
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.008G192700 [exp]	21.81	0.8810

Compare expression of checked genes

Potri.001G457700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.