Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31470 114 / 6e-28 DOR DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) AT1G47790 109 / 2e-26 F-box and associated interaction domains-containing protein (.1) AT4G38870 108 / 5e-26 F-box and associated interaction domains-containing protein (.1) AT5G50220 104 / 7e-25 F-box family protein (.1) AT4G21240 104 / 2e-24 F-box and associated interaction domains-containing protein (.1) AT1G32420 102 / 2e-24 F-box and associated interaction domains-containing protein (.1) AT1G50870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) AT3G49450 102 / 1e-23 F-box and associated interaction domains-containing protein (.1) AT4G19940 100 / 8e-23 F-box and associated interaction domains-containing protein (.1) AT1G30790 99 / 1e-22 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144000 [exp] 137 / 3e-36 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 118 / 1e-29 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 110 / 5e-27 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.006G013000 [exp] 107 / 3e-25 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 102 / 6e-24 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.008G215901 [exp] 100 / 4e-23 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 98 / 3e-22 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 97 / 5e-22 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 96 / 9e-22 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034309 [exp] 99 / 1e-22 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 100 / 2e-22 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 90 / 3e-19 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 88 / 3e-19 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10013872 [exp] 89 / 4e-19 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10011197 [exp] 87 / 3e-18 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 87 / 3e-18 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 86 / 8e-18 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 86 / 9e-18 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 81 / 1e-16 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G458400.1 pacid=42791611 polypeptide=Potri.001G458400.1.p locus=Potri.001G458400 ID=Potri.001G458400.1.v4.1 annot-version=v4.1 ATGGACAAAGGCGAAGCCACCATTGAAACAGGAGCAACAAAATCCAGTGAAGGCCGTGAAAGCAAGATTGGAAGAGTTCAAGCTGTAGGATATCACATCC CACAAGATATAGTTGCTGAAATTCTTGCCAAACTCCCAGCGAAGTCTCTCATGCGATTCAGGTGCGTTTGCAAGACATGGTCTTCCTTGATTAGAGATCC TTTCTTTGTTAAGTTGCACCAGAACCAATCCTTGAATAAACCTTGCAAAACCGGACTCCTCATGTCCACAAAGCATCAACTATTCAACAGCCACTTTGTC TTCGCTGACCATGAAGGAAAACAAGCCCTCGAAGAAGACACAATCTCCATACCAAAATCTTCTAACGTTTTGGGGATTGCAAACGGTTTAGCATGCATCG TTAACGATAAACACCGTATCTCAGTCTATAATCTTAGCACCCGTGAAAGTACAACCATTCCTCCGCCTCCGCAGGAGATAAGAATTCAAGACCGTCTTTC CTTCGGGTTTGATCCTTTGGCTAATGAGTACAAGATAGTGAAGTTTTGTGCTCATGACAAAGAGCAATTTGAGATTTTTACGTTGGGGACAGAAAGGTGG AGAAGAATAAATAGGAAGCATTATAATTTTTATGGGGGCGCGAAGTGGTATGATTTTAAGGAAGCTATATGTGTCAAAGGAGTTATTTATTGGATGGTAA AATCTATGGCGGAATCGTTGAAGATTAATCTACATTCGTTTGACGTTCATGGCGAGAAGTTTCAACAAGTTGCTGTCCCAGGCAATGGCTTATGCTTGTT TAGTGATCTAATACAAATCGAAGGCTGTCTAGCAGTAATTCAAGATTCAGAGTGTGGAAATAAATTTAAACTAAAGATGCTACAAGACTATCATAACAAC GTTTGGACCCATAAGATTATAGACATTCCACTAGGTCCGAAAGATGTTCGATATCCTACTTTGGCTGGAACTCTAGGAACTGGTGAGATCTTGATTCTGG ACGATCACTTCTCTGGGTGTTTTAGACTGTTTTATAGTGATATGGGGAGTAAGAGATTACGAAGCGCAAAGATTGCCTTGCCATCTTTCTTTGGTGAGAA TAAATGGAAAAGATATTATGCGAATCATTTCTCGCAAACAGGAGAAAATAATGGGAGTTGGCTCTACAGTGCAAGTATTTTTAGCTTTCATCATGTGGAG AACATCTTGCCATTGAAAGAAGACGGCGGCTTTATTTGA
AA sequence Show only first row Show all	>Potri.001G458400.1 pacid=42791611 polypeptide=Potri.001G458400.1.p locus=Potri.001G458400 ID=Potri.001G458400.1.v4.1 annot-version=v4.1 MDKGEATIETGATKSSEGRESKIGRVQAVGYHIPQDIVAEILAKLPAKSLMRFRCVCKTWSSLIRDPFFVKLHQNQSLNKPCKTGLLMSTKHQLFNSHFV FADHEGKQALEEDTISIPKSSNVLGIANGLACIVNDKHRISVYNLSTRESTTIPPPPQEIRIQDRLSFGFDPLANEYKIVKFCAHDKEQFEIFTLGTERW RRINRKHYNFYGGAKWYDFKEAICVKGVIYWMVKSMAESLKINLHSFDVHGEKFQQVAVPGNGLCLFSDLIQIEGCLAVIQDSECGNKFKLKMLQDYHNN VWTHKIIDIPLGPKDVRYPTLAGTLGTGEILILDDHFSGCFRLFYSDMGSKRLRSAKIALPSFFGENKWKRYYANHFSQTGENNGSWLYSASIFSFHHVE NILPLKEDGGFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31470		DOR	DROUGHT TOLERANCE REPRESSOR, F...		Potri.001G458400 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	3.31	0.8702
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	7.93	0.8413
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.010G248401 [exp]	9.00	0.7981
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	10.00	0.8257
					Potri.013G078001 [exp]	13.26	0.7757
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	14.86	0.7884
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.001G269200 [exp]	15.49	0.8132
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	22.24	0.7758
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	22.80	0.8190
AT1G34630			unknown protein		Potri.005G165100 [exp]	24.73	0.7276

Compare expression of checked genes

Potri.001G458400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.