Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14540 389 / 2e-136 Peroxidase superfamily protein (.1) AT1G14550 383 / 6e-134 Peroxidase superfamily protein (.1) AT5G05340 354 / 2e-122 Peroxidase superfamily protein (.1) AT5G58400 342 / 2e-117 Peroxidase superfamily protein (.1) AT5G58390 308 / 3e-104 Peroxidase superfamily protein (.1) AT5G06720 284 / 1e-94 ATPA2 peroxidase 2 (.1) AT5G06730 276 / 4e-91 Peroxidase superfamily protein (.1) AT1G44970 269 / 1e-88 Peroxidase superfamily protein (.1) AT2G18150 267 / 4e-88 Peroxidase superfamily protein (.1) AT4G36430 267 / 5e-88 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458700 [exp] 601 / 0 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 414 / 3e-146 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 409 / 6e-144 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 406 / 4e-143 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 403 / 8e-142 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 403 / 8e-142 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 400 / 9e-141 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 400 / 1e-140 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 399 / 5e-140 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024209 [exp] 418 / 2e-147 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009898 [exp] 404 / 6e-142 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009902 [exp] 401 / 8e-141 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10009900 [exp] 399 / 6e-140 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10024208 [exp] 390 / 2e-136 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10034207 [exp] 333 / 6e-114 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030148 [exp] 327 / 2e-112 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 322 / 5e-109 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10006534 [exp] 314 / 1e-106 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009932 [exp] 315 / 2e-105 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G458900.1 pacid=42793362 polypeptide=Potri.001G458900.1.p locus=Potri.001G458900 ID=Potri.001G458900.1.v4.1 annot-version=v4.1 ATGGTTTCTCGTTTATCTTTAGCTTGTGTTGTTTTTTCATTATTCTTGATTTCCTCATGCTTGCCATGCCAAGCACAACTGTCTTCAAACTTCTATGACA GCACATGTCCGAATGCACTGACCACAATTCGTACTGCTATTCGGAGAGCTGTCTCGAGTGAGCGCAGAATGGCAGCATCCCTTATTCGTCTTCACTTCCA TGATTGCTTTGTTCAAGGTTGTGATGCTTCAATCATGCTTGACAATTCTCCTTCAATAGATAGCGAGAAATTCTCATTCAGCAATAACAATTCAATCCGG GGATTTGAAGTCATTGATGATGCCAAGGCTCAAGTGGAGAGCATATGTCCTGGAGTTGTTTCATGTGCTGACATTGCTGCTGTAGCAGCCCGTGATGCAT CTGTTGCTGTTGGTGGACCATCATGGACAGTGAGGCTTGGAAGAAGGGACTCCACCACAGCAAGCCGAAGCCTAGCTGACAGCGATATTCCTAGAGCTAC AACTAGCCTTGTAAACCTAATTGGCATGTTCAATGGAAAAGGTTTGAGTGAAAGAGATATGGTTGCCCTTTCAGGATCACATACAATAGGCCAAGCAAGA TGTGTGACCTTCCGAGGCAGAATATATGACAATTCAAGTGATATTGATGCTGGTTTCGCCAGCACCAGAAGACGCAATTGTCCATCTGCTTCCGGTAACG GAAATAATAATCTTGCTCCACTTGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAGGAATCTCATTCAAAGGAGGGGACTTCTTCAATCAGA CCAAGAGCTCTTTAGTGGTCAATCTACAGACAGCATAGTCACCGAGTACAGCAGGAACGCTTCACTTTTTAGTTCTGATTTTGCCGCTGCCATGTTAAGG ATGGGAGATATAGAACCACTGACTGGTTCTCAAGGAGAGATACGAAGGGTTTGCAGTGTTGTTAATTGA
AA sequence Show only first row Show all	>Potri.001G458900.1 pacid=42793362 polypeptide=Potri.001G458900.1.p locus=Potri.001G458900 ID=Potri.001G458900.1.v4.1 annot-version=v4.1 MVSRLSLACVVFSLFLISSCLPCQAQLSSNFYDSTCPNALTTIRTAIRRAVSSERRMAASLIRLHFHDCFVQGCDASIMLDNSPSIDSEKFSFSNNNSIR GFEVIDDAKAQVESICPGVVSCADIAAVAARDASVAVGGPSWTVRLGRRDSTTASRSLADSDIPRATTSLVNLIGMFNGKGLSERDMVALSGSHTIGQAR CVTFRGRIYDNSSDIDAGFASTRRRNCPSASGNGNNNLAPLDLVTPNSFDNNYFRNLIQRRGLLQSDQELFSGQSTDSIVTEYSRNASLFSSDFAAAMLR MGDIEPLTGSQGEIRRVCSVVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14540			Peroxidase superfamily protein...		Potri.001G458900 [exp]	0	1
					Potri.013G012800 [exp]	3.31	0.5965
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008000 [exp]	3.74	0.6193
					Potri.003G109601 [exp]	8.77	0.6881
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	8.94	0.6324
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.014G118300 [exp]	38.30	0.6021
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	43.01	0.5627
					Potri.008G053150 [exp]	88.20	0.5650
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	92.37	0.5650
AT3G19920			unknown protein		Potri.007G073600 [exp]	93.72	0.5650
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	102.11	0.5444

Compare expression of checked genes

Potri.001G458900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.