Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20800 622 / 0 FAD-binding Berberine family protein (.1) AT1G26390 597 / 0 FAD-binding Berberine family protein (.1) AT1G26420 593 / 0 FAD-binding Berberine family protein (.1) AT1G26380 584 / 0 FAD-binding Berberine family protein (.1) AT1G26400 579 / 0 FAD-binding Berberine family protein (.1) AT1G26410 569 / 0 FAD-binding Berberine family protein (.1) AT1G34575 551 / 0 FAD-binding Berberine family protein (.1) AT1G30700 545 / 0 FAD-binding Berberine family protein (.1) AT1G30720 538 / 0 FAD-binding Berberine family protein (.1) AT1G30710 530 / 0 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155900 [exp] 941 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 777 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 733 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 720 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 664 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 626 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 608 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 600 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 574 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023374 [exp] 583 / 0 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 570 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 568 / 0 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 555 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 554 / 0 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 544 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 539 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 498 / 2e-172 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 491 / 4e-170 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 487 / 8e-168 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G459100.1 pacid=42793658 polypeptide=Potri.001G459100.1.p locus=Potri.001G459100 ID=Potri.001G459100.1.v4.1 annot-version=v4.1 ATGAAAATGAAGGTTTCAATGTCTATAATTCTCTCAGTATTTTCAGCTCTTCTTTTGTCAGTATCATTGGCATCTTCTGATTCAAGTCTTGAAAAATTTC TACAATGCCTTCCTAACAATAGTCTTCCCTCTTACCCCATCTCCGAAGCCATCTATACAACTGCGAATTCCTCTTTCGAGTCTGTTCTGCAGACATATAT CAACAACAGAAGATTTTTGACCCCAACAACACCGAAACCAATTGCCATCGTTACGGCCCTGCATGAATCCCATGTCCAAGCAACAGTCATTTGTGCAAAG GCTAGTGGCTTGCAGGTTAGAATCCGGAGCGGTGGACATGATTACGAAGGTCTTTCTTACGTATCCGAGGTCCCATTCGTCATCCTCGACATGTTCAACC TCCGATCCATCGACGTAGACATCGCCAACGAAACGGCATGGGTTCAAGCTGGGGCAACTCTTGGTGAAATTTACTACAACATTGCGAACAATAGTAATGT GCATGCCTTTCCAGCTGGTGTTTGCCCTACTGTTGGTGCAGGTGGTCATATTAGCGGAGGAGGGTACGGGACTCTGATGAGGAAATATGGTCTTTCCGTC GATAATATCATTGACGCGAAAGTAGTAGATGTCAATGGTAATATCCTCGATCGGGAGACAATGGGGGAAGATCTGTTTTGGGCCATCAGAGGAGGTGGTG GAGCAAGCTTTGCAGTGGTTCTTTCTTGGAAGATGAATCTGGTTCGAGTTCCGGAGAAAGTGACTGTTTTCAAGGTTGATAGGACCTTGGAGGAAGGTGC AACTGATATTTTCTATCAGTGGCAACAAGTTTCTACTGAGCTAGACAAAGACCTTTTCATCCGAGCAATGCCACAAGTTGCCAATGGAAGCCAAGAGGGT ACTAAGACAATCAGCATCTCTTTCTATGCCCTCTTTCTAGGACAAAGTGAGGCCCTTCTTTCCATGATGAACAAGAGCTTCCCTAAATTAGGTTTGCAGC AAAAAGACTGTATTGAAATGAGATGGATAGAGTCAACACTTTTCTGGTTTGATTTGCCGATTGGTACATCCATCGATGTTTTACTCAATAGGCCTCAAGG AGCGCAAAGCTTTTACAAGAACAAATCTGATTACGTGAACCAAATTGTTCCAAAGGAAGCTTTGGAACGCATATGGAAAATGATGATCAAGGCCGACCCA ATGTGGATGCAATGGAACCCTTACGGAGGAAGAATGAGTGAGATTCCAGATACCGCAACTCCATTCCCTCACAGAGCCGGATACCTATTCAAACTCCAGT ACTCCATAAACTGGGATGAAGAAGGGACTGAGGCCACTGAGCGCTATATAAGTTTGATAAGAGAAATGCATGATGCGATGGCTCCATACGTCACCAGTTA CCCAAGGGAAGCATTCCAAAACTATAGAGATCTTGATATCGGTAGCAATCCGAGCAATCAGACCGACTTCGAGAGAGCTAAAGTTTATGGCCTCAAGTAC TTCAAGGGTAACTTTCTAAGATTGGTGAAAATCAAGGGGAAGGTAGATCCAGATAATTTCTTGAAGCATGAACAAAGCATTCCACCACGTTGGATATAG
AA sequence Show only first row Show all	>Potri.001G459100.1 pacid=42793658 polypeptide=Potri.001G459100.1.p locus=Potri.001G459100 ID=Potri.001G459100.1.v4.1 annot-version=v4.1 MKMKVSMSIILSVFSALLLSVSLASSDSSLEKFLQCLPNNSLPSYPISEAIYTTANSSFESVLQTYINNRRFLTPTTPKPIAIVTALHESHVQATVICAK ASGLQVRIRSGGHDYEGLSYVSEVPFVILDMFNLRSIDVDIANETAWVQAGATLGEIYYNIANNSNVHAFPAGVCPTVGAGGHISGGGYGTLMRKYGLSV DNIIDAKVVDVNGNILDRETMGEDLFWAIRGGGGASFAVVLSWKMNLVRVPEKVTVFKVDRTLEEGATDIFYQWQQVSTELDKDLFIRAMPQVANGSQEG TKTISISFYALFLGQSEALLSMMNKSFPKLGLQQKDCIEMRWIESTLFWFDLPIGTSIDVLLNRPQGAQSFYKNKSDYVNQIVPKEALERIWKMMIKADP MWMQWNPYGGRMSEIPDTATPFPHRAGYLFKLQYSINWDEEGTEATERYISLIREMHDAMAPYVTSYPREAFQNYRDLDIGSNPSNQTDFERAKVYGLKY FKGNFLRLVKIKGKVDPDNFLKHEQSIPPRWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20800			FAD-binding Berberine family p...		Potri.001G459100 [exp]	0	1
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	5.74	0.9639	Pt-ZIP6.4
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G088000 [exp]	8.12	0.9603	Pt-FRO1.1
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	8.36	0.9629	Pt-NRAMP1.4
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	10.67	0.9620
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	13.22	0.9617
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Potri.015G117700 [exp]	15.00	0.9574
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	18.54	0.9580
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	19.28	0.9547
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	19.62	0.9567
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.013G153801 [exp]	20.19	0.8953

Compare expression of checked genes

Potri.001G459100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.