Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 327 / 2e-111 ATCXE18 carboxyesterase 18 (.1) AT5G27320 249 / 8e-81 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 236 / 2e-75 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 231 / 2e-73 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 191 / 2e-58 ATCXE20 carboxyesterase 20 (.1) AT5G06570 162 / 3e-47 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 159 / 7e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 156 / 5e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 150 / 2e-42 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014302 [exp] 400 / 4e-140 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.004G092500 [exp] 366 / 1e-126 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.013G028700 [exp] 250 / 7e-81 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 239 / 8e-77 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 234 / 5e-75 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 233 / 2e-74 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 174 / 5e-52 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 174 / 1e-51 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 169 / 8e-50 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039162 [exp] 344 / 7e-118 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 314 / 5e-106 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10000928 [exp] 255 / 5e-83 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 251 / 2e-81 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 237 / 1e-75 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10029541 [exp] 224 / 1e-71 AT5G23530 256 / 2e-84 carboxyesterase 18 (.1) Lus10036168 [exp] 181 / 3e-54 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 180 / 4e-54 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 181 / 1e-50 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015989 [exp] 167 / 3e-49 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF10340 [poplar] [flax] Say1_Mug180 Steryl acetyl hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G459400.1 pacid=42787757 polypeptide=Potri.001G459400.1.p locus=Potri.001G459400 ID=Potri.001G459400.1.v4.1 annot-version=v4.1 ATGTCTCAAAACTCAGCTGACCTCCCATGGAAGGTAAGGCTCTTTACATCCCTCATCTCCTTCACCTTTAAAGTCATGATTCGTCGCTCTGATGGATCTC TGAACCGCCTCTTGCTCAACTTTCTCGACTATAAAACCTCTCCATCGCCTGACAAGCCCATAGATGGTGTCACAACCACTGATTTCACTATTGATGAAGA CCGCAACCTTTGGTTCCGCCTCTACAACCCCGTCTTCAGAACTTCAACCACCGACAATGAAGTTAACATCCCAGTTATTTTCTACTTCCACGGGAGTGGG TTCGTCTGCATGGCGGCCAATTCAAAGCTGTTTGATGATTTATGCTACAGGCTCGCCCGCCTGCTACCTGCAGTCATCATCTCTGTAAACTACAGGCTGG CTCCTGAGCATAGGTATCCATGCCAATATGAAGACGGTTTTGATGTTATAAAATTTATTGATATATCATACCTTGAAGTCCTTCCAAACCATGCCAATCT CAAGCACAGTTTTGTTGCTGGAGACAGTGCTGGTGGCAATCTAGCTCATCACATGGCACTAAAGGCTAGCAAATATGAACTTTCCAACATAAAACTGAAT GGAGTTATAGCCATACAGCCATTCTTTGGAGGAGAAGAGCGTACAGGATCTGAAATCAAGCTTTCCAGAGATCCCATTGTTCCAATGGATACTACAGACT GGATGTGGAGATCGTTTCTGCCAGAGGGTTCGAATCGGGACCATCAGGTGTCGAATGTTTTTGGGCCTAACTCTGTTGACATTTCAGAGCTTGAATTCCC TGCAGTTCTTGTTATTATTGGGGGGTTGGATCCTCTCCAGGACTGGCAAAAGAGGTACTGCGAGGGACTGAAGAAAAGTGGAAAAGAAGTGTATTTAGTG GAGTATGACAACGCATTCCATTCATTTTACCTTTTTCCTTGTGTGCCTGAGTTTTCTTTGTTTATCAAGGAAGTGAAAGATTTTATGCAAAAGCAAATGT CCAGATGA
AA sequence Show only first row Show all	>Potri.001G459400.1 pacid=42787757 polypeptide=Potri.001G459400.1.p locus=Potri.001G459400 ID=Potri.001G459400.1.v4.1 annot-version=v4.1 MSQNSADLPWKVRLFTSLISFTFKVMIRRSDGSLNRLLLNFLDYKTSPSPDKPIDGVTTTDFTIDEDRNLWFRLYNPVFRTSTTDNEVNIPVIFYFHGSG FVCMAANSKLFDDLCYRLARLLPAVIISVNYRLAPEHRYPCQYEDGFDVIKFIDISYLEVLPNHANLKHSFVAGDSAGGNLAHHMALKASKYELSNIKLN GVIAIQPFFGGEERTGSEIKLSRDPIVPMDTTDWMWRSFLPEGSNRDHQVSNVFGPNSVDISELEFPAVLVIIGGLDPLQDWQKRYCEGLKKSGKEVYLV EYDNAFHSFYLFPCVPEFSLFIKEVKDFMQKQMSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.001G459400 [exp]	0	1
AT1G23170			Protein of unknown function DU...		Potri.004G091100 [exp]	6.78	0.7340
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	8.12	0.7489
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	8.83	0.7947
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	19.05	0.7732	RGA3.1
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	23.02	0.7618
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	24.33	0.7268
					Potri.016G139750 [exp]	27.47	0.6811
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G191900 [exp]	32.74	0.7528	Pt-GT2.2
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.014G165500 [exp]	38.41	0.7488
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	39.19	0.7615	ENOD8.2

Compare expression of checked genes

Potri.001G459400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.