Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MUR4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30620 729 / 0 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 698 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 650 / 0 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 416 / 2e-146 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64440 258 / 3e-83 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10960 252 / 1e-80 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 246 / 2e-78 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 239 / 9e-76 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 231 / 1e-72 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G78570 102 / 3e-23 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156100 [exp] 819 / 0 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 677 / 0 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 667 / 0 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G090700 [exp] 256 / 3e-82 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 248 / 3e-79 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.003G140900 [exp] 246 / 4e-78 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.001G383500 [exp] 102 / 2e-23 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 101 / 7e-23 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 99 / 5e-22 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038423 [exp] 709 / 0 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 690 / 0 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 689 / 0 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10023074 [exp] 256 / 2e-81 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 249 / 2e-79 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 249 / 2e-79 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 226 / 2e-70 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 226 / 5e-69 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10032394 [exp] 209 / 8e-65 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038146 [exp] 104 / 7e-24 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02719 [poplar] [flax] Polysacc_synt_2 Polysaccharide biosynthesis protein
Representative CDS sequence Show only first row Show all	>Potri.001G459700.3 pacid=42792400 polypeptide=Potri.001G459700.3.p locus=Potri.001G459700 ID=Potri.001G459700.3.v4.1 annot-version=v4.1 ATGCTAAGTTTTGGCAGGACCAGAACTCAGCCAAGGTCCAATAGATCTATGTCCCTTGGAGGCATGGATTTTTCAGATCCAAAAAGAAAAAATAATGTTG TAGGAAAGATTCTTTTGGCCGCTTCCCTAACAGCTGTATGTATAATTATGCTGAAACAATCTCCAACCTTTAATTCTCCAAGCCCGTTCTCTTTGCGTGA AGATGGGGTGATCCATGTCCTTGTGACAGGTGGTGCTGGCTACATTGGTTCCCATGCAGCATTGCGACTTTTGAAGGATGGTTACCGAGTAACCATAGTG GACAACCTTTCTCGAGGAAACTTAGGTGCAGTCAAGGTTTTACAAGAGTTATTTCCTGAGCCTGGGAGGCTTCAGTTTATATATGCTGACTTGGGAGAGC CTAAAACTGTTAACAGCATCTTTTCACAAAATGCATTTGATGCTGTGATGCATTTTGCAGCAGTTGCATATGTTGGGGAAAGCACCGTGTACCCCCTTAA GTACTATCACAACATTACATCAAATACCTTGGTAGTGTTGGAGTCAATGGCTGCAAATGATGTAAAGACTTTGATATATTCAAGCACATGTGCAACATAT GGGGAGCCTGAAAAGATGCCTATTACTGAAGACACTCCACAGGTACCCATTAATCCATATGGAAAAGCTAAGAAGATGGCAGAAGATATCATCCTTGACT TCTCTAAAAATTCAGACATGGCAATTATGATATTGAGATACTTCAATGTGATTGGATCAGATCCAGATGGAAGGTTAGGTGAGGCTCCTAGACCTGAACT GCGTGAGCACGGACGAATTTCTGGTGCTTGTTTTGATGCTGCTCGTGGTATTGTTGCTGGACTAAAGGTTAAAGGAACGGACTATAAGACACACGATGGA ACTTGTATAAGAGATTATATCGATGTTACTGATCTTGTTGATGCTCATGTTAAAGCACTTGAAAAGGCAATGCCTGGGAAAGTTGGAATCTACAATGTTG GCACTGGAATGGGTAGATCAGTCAACGAGTTTGTACATGCATGTAAAAAGGCAACCGGTGTAGATATCAAAGTAGACTATTTACCTCGCCGGCCTGGTGA CTATGCTGAAGTGTTTAGTGACCCATCAAAAATTAACCGTGAGCTGAACTGGACAGCACAATACACTGATCTCCAAAAGAGTTTACAGGTTGCATGGAGA TGGCAAAAATCACATCAAAATGGGTATGGATCCCCTTTGGTGATGGCTTCTTGA
AA sequence Show only first row Show all	>Potri.001G459700.3 pacid=42792400 polypeptide=Potri.001G459700.3.p locus=Potri.001G459700 ID=Potri.001G459700.3.v4.1 annot-version=v4.1 MLSFGRTRTQPRSNRSMSLGGMDFSDPKRKNNVVGKILLAASLTAVCIIMLKQSPTFNSPSPFSLREDGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIV DNLSRGNLGAVKVLQELFPEPGRLQFIYADLGEPKTVNSIFSQNAFDAVMHFAAVAYVGESTVYPLKYYHNITSNTLVVLESMAANDVKTLIYSSTCATY GEPEKMPITEDTPQVPINPYGKAKKMAEDIILDFSKNSDMAIMILRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIVAGLKVKGTDYKTHDG TCIRDYIDVTDLVDAHVKALEKAMPGKVGIYNVGTGMGRSVNEFVHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWR WQKSHQNGYGSPLVMAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.001G459700 [exp]	0	1	MUR4.1
AT3G53440			Homeodomain-like superfamily p...		Potri.018G000700 [exp]	12.12	0.6080
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.012G090100 [exp]	22.64	0.6233
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	54.08	0.5895
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.002G093400 [exp]	55.99	0.5811
					Potri.001G248704 [exp]	79.87	0.5904
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.005G227000 [exp]	90.33	0.5989
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	98.97	0.5782
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	110.96	0.5648
AT1G53820			RING/U-box superfamily protein...		Potri.003G073300 [exp]	165.39	0.5640
AT3G54800			Pleckstrin homology (PH) and l...		Potri.010G223400 [exp]	189.20	0.5429

Compare expression of checked genes

Potri.001G459700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.