Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30610 783 / 0 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G67570 401 / 2e-124 EMB246, DG1, EMB1408 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 124 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 114 / 2e-25 GUN1 genomes uncoupled 1 (.1) AT2G18940 111 / 1e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48810 109 / 3e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 106 / 3e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 105 / 4e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 105 / 5e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 105 / 5e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004900 [exp] 406 / 2e-125 AT5G67570 862 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 124 / 5e-29 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G069600 [exp] 115 / 5e-26 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 114 / 2e-25 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 112 / 3e-25 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 109 / 3e-24 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 108 / 3e-24 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 108 / 5e-24 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 108 / 5e-24 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023384 [exp] 785 / 0 AT1G30610 734 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10025202 [exp] 390 / 5e-120 AT5G67570 800 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012091 [exp] 380 / 2e-116 AT5G67570 805 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 126 / 3e-29 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 125 / 7e-29 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039149 [exp] 121 / 1e-27 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026545 [exp] 114 / 2e-25 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013832 [exp] 113 / 8e-25 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025473 [exp] 106 / 5e-23 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011464 [exp] 104 / 2e-22 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G459900.1 pacid=42789122 polypeptide=Potri.001G459900.1.p locus=Potri.001G459900 ID=Potri.001G459900.1.v4.1 annot-version=v4.1 ATGGAGGTGATAATTATGACAAATGGGCAAAACGGTTTATCTGGTTTTGAAAGAAATGGGAACTTAAACTGTAATTGTAGCTGGAAACCATATTCTTCAT GTGGGCCTTTGAATTCTTGGAGACCTCCGATTTTTGGTGTTCCATTGAAGAGCAAGCGTGGGAAAGCAATGAGAGTTGTTGGTTTAAGAGTTAAGGCATT GCAAAAAGACGAGTCTGATAATCGGTTGGTTGGTAGTGGTGGGGTTATTGAGAAAGAGTTTGAATTTAAACCATCTTTTGGTGAGTATTTGAAGGCTATG GAGTCTGTTAAGACTGGAAGAGAAAAGAACCAAGTACATAAGTCAAATAGTTCTAAGTTGAAGGATGATTTGGAGGGGAATGATGCGCCATTGTTGGAAA GAGATGAAAGGAGTGTAAAATTGAGGGGGTTTAAGGATCGAGTGAAGGTGTCCAAAGTCATGGAAAGTGATGAGTTTGGCGAGAATGCTAATAGACCCAG TGGTGAGGAAGATGTAGTTAACGCGGAGCTTGATTACAGAAGAGGAAGAATTAGAGAGTTCAATCATAATGTGGGTGGCAAAGAAAGTCATGCGCATGCT AATGTAAGAAGGAAGAGGGGAGGAGCTACAAGTAATGAGCGATGGTTGAGGAATGGCACCAGGAGCTCGAACTCAGACTTGGAGGACCTCAATTATAGGA GTTATAAGTTGAAGGGTGATTTAGAGGAGAGTGATGCCCCATCATCGGTAAGACATGAAAGCAGTGTGAATTTGAGGAGGTTTAACAATCAAGAAAAGGT GTCTGGAGTCATGGAAAGTGATGAGTTTGGTGACAATGGTGATGGATGCTCTGGTCAAGAAGATGTAGTTAATGCAGAGCTTAATTACAGAGGAGGTAGA ATTAGAGAGTTCAATCATAAGGTGGGTGGCAAAGAAAGTCACGTTCATGCTAATGCAAGAAAGAAAATGGGAGGAGCTACAAGTGATGAGCGATGGTTGA GGAATAGAACCAGTAGCATGAATTCAGACTTGGAGGACCTCAATTATAGGAGTTATAAATTGAAGGGTGATTTAGAGGAGAGTGATGCCCCATCATCAGT AAGACATGAAAGCAATGTGGATTTGAGGAGGTTTAACAATCGAGAAAAGGTGTCTGGAGTCATGGAAAGTGATGAGTTTGGTGACAATGGTGATGGATGC TCTGGTCAAGAAGATGTAATTAATGTTGAGCTTGATTACAGAGGAGGTAGAATTAGAGAGTTCAATCATAAGGCGGGTGGAAAAGTAAGTGGTGTGCATG CTGATTTTAGAAGGAAAATGGGAGGGGCAACGAGTGATGGAAGATGGTTGAGGGATCATACTAGCAGCATGAATTCAGACTCGGAGGATTTCAATGAAAC CAAGAGTATGAAGACTCAAATTGCACAACGAAGTCCTATGGTATTAGGTTATATTGAAAGCATTGACAGAACTATTGGCTTAAAAGAAAATCTTGCTCAT GCTAAAGATTCCCTGGATATGTTCGGAATAAAGGGGAAAGCTTTTGAAAAAGAGAACATTGGTTCTGGAGTCAACAAAATGAATGGTGGACTTGTCAGGA ATCGTAGTCAAGCTGATAAAATTACTGACAAGAGATATGTGCAGAAAAACAGATTATCAAGAAGAAGTGATCAGGCTTTTCTTGAAAGGGGCTATGGTGA GGATTTTGAAGTGGAAAGGGCTGCCTTCAAAAGCTTTGAGCAATCCAATGATGTTATCGGCAAGACAAAAGTTCCGATGTGGAAAATAGAGGAGAAGATT CAGAAGCTAGGAAACTGGTTAAATGGTGCTGATATTGATATGCCTGAGTGGATGTTCTCTAAGGCTATGCGTAGTGCTAGAGTTAAATATACAGATCATT CTGTATTGAGGATTATCCAGATATTGGGTAAATTGGGCAATTGGAGGCGAGTGCTACAAATTATCGAGTGGCTTAACATACGAGAACGCTATAAATCCCA CAGGCTAAGCCATGTTTACACAACTGCACTTCATGTACTTGGCAAGGCAAAAAGACCTGTGGAGGCACTTAATTTATTTCATGCAATGCAGCAAGAAATG TGTTTGTATCCTGACCTAGTAGCTTATCGTTCTATAGCTGTCACTCTCGGACAAGCAGGATATATGAAGGAACTTTTTGATGTAATAGATAGCATGCGAT CTCCTCCCAAGAAGTTCAAATCTGGGGCACCTGGGAAGCGGGACCTAGGGTTGGAACCTGATCTTGTTGTCTACAATGCGGTCCTAAATGCTTGTGTTCG GCGAAAACAATGGGAAGGTGCATTTTGGGTCTTACAGCAGATGAAGGAAAAGGGTGTGCAACCTTCTACTGCAACGTATGGACTTGTTATGGAGGTCATG CTTGCTTGTGGCAAGTACAACTTGGTTCATGAGTTCTTCAAAAAAGTTCAGAAGTCTTCCATTCCGAATGCCTTGGTATATAAAGTTCTTGTCAATACTT TTTGGAGAGAGGGTAAGACAGAAGAGGCTGTGTTGGCTGTTAAAGACATGGAAAGACGGGGAATTGTGGGTTCAGCTGCTCTTTATTATGATCTTGCACG CTGTCTCTGTACATCTGGAAGGTGTCAAGAAGCACTAGATCTGATTGAGAAAATATGCAAGGTTGCTAATAAGCCGCTCGTAGTAACTTACACTGGCTTA GTCCAAGCTTGTCTGGACTCTGGAAACATTCAAAACGCTGTGTACATCTTCAATCAAATGAGGAACTTTTGCCCCCCAAATCTTGTTACTTGCAACATAA TGCTGAAAGCGTATCTAGAACATGGATTGTTTGAAGAAGCAAACGAGCTTTTCAACAAGATGTTAGACGATGGCAATCATATCAGCAGAAGATCTGATTA CAAGTTTCGGGTAATTCCAGATATCTATACTTTCAACACCATGCTTGATGCAAGCATTGCAGAGAACAAGTGGGATGATTTTGAGTATGTTTATCAAAAG ATGTTGCGCCATGGGTTCCACTTCAATGCAAACCGTCATCTTCGAATGGTACTGGATGCTTCTAGAGCTGGAAAGGGAGAAGTTTTGGAAATAACTTGGA AGCACTTGGCACAGGAAGATAGGATTCCTCCGCCGCCTCTTGTCAAAGAAAGATTTTGCATGATGCTTGAAAAAGAAGACTTCGATTCTGCTCTTGCTTG TATTACCACAAATTCTGCTGGAGAGTCTCAAGCATTCTGCAAAAGTGCCTGGTTGAATTTATTCGAAGAAAACGCTCAGCGGTTTAGAAAGGACACCCTC ATGCGGCTAATGCATGAGGTGCGTGTGCTTGCTGCTCAAAGCAACTCGCCAAACCCTGTATTGCAAAATCTATTAATATCCTGTAGTGATTATAATAGGC CTCGTGTAAAGGTTCCTGGATTCAATCAAACATAG
AA sequence Show only first row Show all	>Potri.001G459900.1 pacid=42789122 polypeptide=Potri.001G459900.1.p locus=Potri.001G459900 ID=Potri.001G459900.1.v4.1 annot-version=v4.1 MEVIIMTNGQNGLSGFERNGNLNCNCSWKPYSSCGPLNSWRPPIFGVPLKSKRGKAMRVVGLRVKALQKDESDNRLVGSGGVIEKEFEFKPSFGEYLKAM ESVKTGREKNQVHKSNSSKLKDDLEGNDAPLLERDERSVKLRGFKDRVKVSKVMESDEFGENANRPSGEEDVVNAELDYRRGRIREFNHNVGGKESHAHA NVRRKRGGATSNERWLRNGTRSSNSDLEDLNYRSYKLKGDLEESDAPSSVRHESSVNLRRFNNQEKVSGVMESDEFGDNGDGCSGQEDVVNAELNYRGGR IREFNHKVGGKESHVHANARKKMGGATSDERWLRNRTSSMNSDLEDLNYRSYKLKGDLEESDAPSSVRHESNVDLRRFNNREKVSGVMESDEFGDNGDGC SGQEDVINVELDYRGGRIREFNHKAGGKVSGVHADFRRKMGGATSDGRWLRDHTSSMNSDSEDFNETKSMKTQIAQRSPMVLGYIESIDRTIGLKENLAH AKDSLDMFGIKGKAFEKENIGSGVNKMNGGLVRNRSQADKITDKRYVQKNRLSRRSDQAFLERGYGEDFEVERAAFKSFEQSNDVIGKTKVPMWKIEEKI QKLGNWLNGADIDMPEWMFSKAMRSARVKYTDHSVLRIIQILGKLGNWRRVLQIIEWLNIRERYKSHRLSHVYTTALHVLGKAKRPVEALNLFHAMQQEM CLYPDLVAYRSIAVTLGQAGYMKELFDVIDSMRSPPKKFKSGAPGKRDLGLEPDLVVYNAVLNACVRRKQWEGAFWVLQQMKEKGVQPSTATYGLVMEVM LACGKYNLVHEFFKKVQKSSIPNALVYKVLVNTFWREGKTEEAVLAVKDMERRGIVGSAALYYDLARCLCTSGRCQEALDLIEKICKVANKPLVVTYTGL VQACLDSGNIQNAVYIFNQMRNFCPPNLVTCNIMLKAYLEHGLFEEANELFNKMLDDGNHISRRSDYKFRVIPDIYTFNTMLDASIAENKWDDFEYVYQK MLRHGFHFNANRHLRMVLDASRAGKGEVLEITWKHLAQEDRIPPPPLVKERFCMMLEKEDFDSALACITTNSAGESQAFCKSAWLNLFEENAQRFRKDTL MRLMHEVRVLAAQSNSPNPVLQNLLISCSDYNRPRVKVPGFNQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Potri.001G459900 [exp]	0	1
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	4.00	0.9387
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	12.68	0.9085
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	15.87	0.9323
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.016G043100 [exp]	16.79	0.8452
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	18.22	0.9317
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	24.00	0.9103
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Potri.010G135100 [exp]	24.14	0.8964
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	25.69	0.9132
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	27.96	0.8681	Pt-NADK2.1
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	30.29	0.9041

Compare expression of checked genes

Potri.001G459900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.