Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HDA9.2,HDA904
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44680 738 / 0 HDA09, HDA9 histone deacetylase 9 (.1) AT5G63110 481 / 3e-168 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 479 / 7e-168 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G35600 402 / 2e-138 HDA7 histone deacetylase7 (.1) AT3G44490 217 / 1e-69 HDA17 histone deacetylase 17 (.1) AT3G44660 179 / 7e-55 HDA10 histone deacetylase 10 (.1) AT1G08460 101 / 2e-23 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 98 / 7e-22 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G26040 87 / 1e-18 HDA2 histone deacetylase 2 (.1.2) AT5G61060 87 / 5e-18 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209800 [exp] 489 / 3e-171 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 485 / 2e-169 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 481 / 1e-168 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 478 / 2e-167 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.011G156250 [exp] 118 / 7e-33 AT3G44680 97 / 7e-26 histone deacetylase 9 (.1) Potri.004G092900 [exp] 91 / 2e-19 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 90 / 5e-19 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 89 / 5e-19 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 83 / 4e-17 AT4G33470 622 / 0.0 histone deacetylase 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020570 [exp] 765 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 729 / 0 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10001605 [exp] 496 / 1e-169 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 474 / 2e-165 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001356 [exp] 469 / 3e-163 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10043337 [exp] 421 / 1e-145 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001850 [exp] 104 / 2e-24 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 103 / 5e-24 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10024919 [exp] 99 / 4e-22 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 98 / 1e-21 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [poplar] [flax] Arginase PF00850 [poplar] [flax] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Potri.001G460000.1 pacid=42790483 polypeptide=Potri.001G460000.1.p locus=Potri.001G460000 ID=Potri.001G460000.1.v4.1 annot-version=v4.1 ATGCGCTCCAAAGACAGAATTGCCTATTTCTATGATGGTGATGTGGGCAGTGTTTATTTTGGACCAAACCATCCAATGAAGCCACACAGACTTTGTATGA CACACCATCTTGTTCTCTCTTATGAGCTACATAAGAAGATGGAAATTTATAGACCACACAAGGCATATCCTGTTGAGCTTGCTCAGTTTCATTCCGAGGA TTATGTTGAATTTTTGCATCGGATTACGCCGGATACTCAGCACTTGTTCGCGGGGGAATTGGCTAGATATAACCTTGGAGAAGATTGCCCTGTCTTTGAA AACTTATTTGAATTTTGTCAGATTTATGCTGGTGGAACTATAGATGCTGCACATAGGTTGAACAATCAACTGTGTGACATTGCTATAAATTGGGCCGGTG GATTACATCATGCAAAAAAGTGCGGGGCATCTGGTTTTTGTTACATCAATGACCTGGTTTTGGGGATTTTGGAGCTTCTGAAACACCATGCTCGTGTTCT GTACATTGATATAGACGTTCATCATGGTGATGGTGTTGAAGAAGCCTTTTATTTCACTGACAGGGTGATGACTGTGAGTTTTCACAAGTATGGAGATATG TTCTTTCCTGGAACTGGTGATGTTAAGGAACTAGGAGAAAGAGAAGGAAAATTTTATGCTATAAATGTTCCACTGAAAGATGGAATCGATGACACTAGCT TCACTCGACTATTTAAAACAATCATTTCCAAGGTTGTAGAAACTTATCAGCCAGGTGCAATAGTTCTTCAATGTGGAGCAGATTCGTTGGCTGGGGACCG CTTGGGCTGCTTCAATCTTTCCATTGATGGGCATGCAGAATGTGTTAGGTTTGTGAAGAAATTCAACTTGCCCTTGTTGGTTACAGGAGGTGGGGGATAC ACAAAAGAGAATGTTGCTCGATGTTGGACCGTTGAAACAGGAGTTCTTTTAGACACAGAACTGCCCAATGAGATTCCAGAAAACGAGTATATTAAATATT TTGCCCCTGATTATTCATTGAAAAGTCCTGGTGGACTCATGGAGAACTTAAATAGCAAATCTTATCTTAGCACAATCAAAATGCAAGTACTAGAGAATCT TCGTTGCATCCAACATGCTCCAAGTGTACAGATGCAAGAGGTACCTCCTGACTTCTTCATTCCCGATTTTGATGAAGATGAGCAAAACCCTGATGAGCGC ATGGATCAGCATACCCAGGACAAGCAAATCCAACGTGACGATGAATATTATGAAGGTGACAATGATAACGACCACGCAGATGGCTCATGA
AA sequence Show only first row Show all	>Potri.001G460000.1 pacid=42790483 polypeptide=Potri.001G460000.1.p locus=Potri.001G460000 ID=Potri.001G460000.1.v4.1 annot-version=v4.1 MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDCPVFE NLFEFCQIYAGGTIDAAHRLNNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDM FFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDYSLKSPGGLMENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFFIPDFDEDEQNPDER MDQHTQDKQIQRDDEYYEGDNDNDHADGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	0	1	Pt-HDA9.2,HDA904
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	1.00	0.8719
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	3.16	0.8528
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.004G197000 [exp]	6.32	0.8073
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	8.30	0.8410
AT5G17610			unknown protein		Potri.013G073100 [exp]	8.48	0.8091
					Potri.010G238700 [exp]	9.79	0.7674
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	10.90	0.7805
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	12.96	0.8033
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.003G110901 [exp]	14.07	0.7985
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	14.45	0.7910	MBD5.2,MBD904

Compare expression of checked genes

Potri.001G460000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.