Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25260 352 / 1e-124 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156300 [exp] 450 / 2e-163 AT1G25260 353 / 5e-125 Ribosomal protein L10 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043280 [exp] 392 / 4e-140 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10030073 [exp] 383 / 7e-137 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 370 / 7e-125 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10001072 [exp] 140 / 8e-43 AT1G25260 122 / 5e-36 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [poplar] [flax] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Potri.001G460100.2 pacid=42788276 polypeptide=Potri.001G460100.2.p locus=Potri.001G460100 ID=Potri.001G460100.2.v4.1 annot-version=v4.1 ATGCCTAAGTCTAAGCGTAACAGGCCAGTTACATTATCAAAAACAAAGAAGAAGGGGAGGGAGCATAAAGAGTCTATAGTGAATTCCATAAGGGATGCTG TGGAGAAGTACAATTCTATATATGTGTTCAGTTTTGAAAACATGAGGAATCTCAAATTCAAGGAGTTCAGAGAACAGCACAAGTTGACCAGCAGATTCTT CCTTGGATCAAACAAAGTAATGCAGGTTTCTCTTGGTCGATCTGCTGCTGATGAAATCAGGCCAGGTCTTCACAAAGTTTCTAAGCTTCTATGTGGTGAT GCTGGACTTTTTCTTACCAACTTGCCAAGAGAAGAAGTTGAAAGGTTGTTTAATGAATACGAGGAATACGACTTTGCAAGGACAGGAACCACTGCAACAG AAACAGTGGAACTCAAGGAAGGACCTCTCGAACAGTTTACTCATGAGATGGAACCCTTTTTGCGCAAGCAAGGAATGCCTGTTCGGTTGAACAAGGGTGT GATCGAACTTGTTTCAGACTTTGTTGTCAGTGAAGAGGGGAAGCCTCTGTCCCCTGAGTGTGCTCGCATTCTGCGCTTGTTAGGAACCAAGACGGCCACC TTCAAGCTTCACTTAATTTGCAGATGGAGCCCTGAGGATTTTGAGCTTTATAGGGAAGGTCTAGATGATTCAGATGTTGAATCTGCCTAA
AA sequence Show only first row Show all	>Potri.001G460100.2 pacid=42788276 polypeptide=Potri.001G460100.2.p locus=Potri.001G460100 ID=Potri.001G460100.2.v4.1 annot-version=v4.1 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQHKLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGD AGLFLTNLPREEVERLFNEYEEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVIELVSDFVVSEEGKPLSPECARILRLLGTKTAT FKLHLICRWSPEDFELYREGLDDSDVESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25260			Ribosomal protein L10 family p...		Potri.001G460100 [exp]	0	1
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	3.87	0.7650
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.014G016300 [exp]	4.24	0.8030
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	7.61	0.7693
					Potri.001G340100 [exp]	14.49	0.7552
AT1G10865			unknown protein		Potri.010G248800 [exp]	19.33	0.7194
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.006G252000 [exp]	19.59	0.7142
AT3G09890			Ankyrin repeat family protein ...		Potri.006G121500 [exp]	19.89	0.7482
AT4G32175			PNAS-3 related (.1)		Potri.012G080300 [exp]	20.88	0.6350
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	21.93	0.7158
AT3G55390			Uncharacterised protein family...		Potri.008G053500 [exp]	22.64	0.6074

Compare expression of checked genes

Potri.001G460100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.