Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25690 345 / 3e-106 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 333 / 9e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G48280 286 / 7e-87 hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 246 / 5e-74 unknown protein AT1G52080 65 / 1e-10 AR791 actin binding protein family (.1) AT4G04980 62 / 1e-09 unknown protein AT1G61080 57 / 6e-08 Hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156500 [exp] 1365 / 0 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 350 / 1e-110 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G130800 [exp] 349 / 2e-106 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 336 / 3e-105 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G279000 [exp] 302 / 2e-94 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 301 / 3e-94 AT1G07120 434 / 4e-151 unknown protein Potri.010G003100 [exp] 283 / 8e-86 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G191300 [exp] 76 / 4e-14 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.003G047200 [exp] 74 / 2e-13 AT1G52080 348 / 3e-112 actin binding protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000986 [exp] 350 / 3e-111 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 332 / 1e-103 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 332 / 2e-103 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034264 [exp] 337 / 6e-102 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034382 [exp] 336 / 2e-101 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 252 / 7e-76 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 157 / 2e-42 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 79 / 1e-14 AT1G11070 330 / 2e-99 unknown protein Lus10011209 [exp] 71 / 4e-12 AT4G04980 336 / 2e-100 unknown protein Lus10018473 [exp] 69 / 8e-12 AT4G04980 347 / 1e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G460300.1 pacid=42789857 polypeptide=Potri.001G460300.1.p locus=Potri.001G460300 ID=Potri.001G460300.1.v4.1 annot-version=v4.1 ATGAGAGAAGAAAACCCAGTTGAAACTAAAACAAAAGCAACAAGATTTGCTGATCAAAACCAAGCACCAAAGTCACAAAACACTAAAGGAAACAGCAACA ACAATGCTTCAAAGATCAAGTCTTCATGGGGTTCACATATAGTGAAAGGCTTCACGGCTGATAAAAAAACCAAAACACAAACAATCACAGTAACAACCAA GAAACTTCCATTAGCAAGTTCAGATATTACAAACCAAAAGAACCTCCTTGTGAATTCTCATTCAAGAGTGAAAAGATCACTCATTGGTGATTTATCTTGC TCAGTTACAGGAAGCCAGATACACCCACATGCCTACCAGGGTAATCACAGGAGACAATCTTCAGGGTCAAGAGATTTGTTTGTGGAATTAGACCAATTAA GGAGCTTGCTTCAAGAATCAAAAGAAAGGGAGTTTAAGTTGCAAGCAGAGTTATCAGAGCTTAAGAGGAATGGGAGAGTAGTTGATATTGAAAGGGAACT TGAAGCAAGAAAAAATGAGGTGGATGAGCTTTGTAAGAGAATTGGGGTTTTGGAGTCTGAAAAAAGTGGTCTTTGTGAACAAGTGAACGAGTTGTGTTTG ATTTCACAGAAGAGAAACGAAGAGGTATTGAAAAGGGAAGGGCATGAGAGTTCATTGGGGAATCTTGAAATGGAAGTTGTGGAATTGAGGAGGTTGAATA AGGAGCTGCAGATGGATAAGAGGAATCTTGCTTGCAAACTCTCTTCTATGGAGTCTCAAAAACCTTCCCTTGCCAAGGCTTCTGAGAGTGACATTGTTGC AAAAATTAAGGCTGAGGCATCTTTGCTAAGGCACACAAATGAAGATTTGTGCAAACAAGTTGAGGGTCTACAGATGAGCAGACTAAATGAGGTTGAGGAG CTAGCCTATCTGAGGTGGGTCAATTCATGTTTAAGAGATGAATTGCGTAATTCATGCTCAACAATGAATTCAGATAAGTCCTCAAGCCCCAAATCGGTAG AGAGGAGTGACGAATCTGCTGGCTTAATGTCTTGCCAGAGTAGTGACTGCTTGGAATATAATAGTAAAAGGAGATTAAATTTGATTAAAAAGTTGAAGAA ATGGCCTATTACTGATGAAGACGTGCCAAACTTAGAATGCCAAGATAAAAATTGGGTGCAATCGGAAGATGGGAGAAGTCCAAGAAGAAGACACTCTATA AGTGGATCAAAGTTCTGTATAGAGGAGTTGGTACCGAATAGGAGAAGGCAATCTGATGGTTTTATGTGTATAAAAGAAATGGAAAATGAAGTAGAGCTTG TAAGTTCTGAAAAGTATGAGTTTGATATAATTCAAAGACCTCAAATCCTTGCATACTGCCAAGAGACCAAAAAAATTTTAGGTCCATTAGATGTTGAGAA AAGGGCTTTGCGTGTTCCAAATCCCCCACCAAGACCCTCATGTTCTGTTTCTGGACCTAAAGAGGAAGGTTCGGCTCAAGTTTCACTCCCACCACTGCCT CCACCACCTCCTCCTCCACCACCACCTCCAAAGTTCTCAGTGAAGAACACTACTGCAGGAGTGGTGCAGCGAGCACCTCAAGTCGTAGAGTTTTACCATT CATTGATGAAGAGAGACTCAAGAAAGGAGTCTTCAAATGGAGGAATCTGTGATGCCTCAGGTGTTGCAAATGTTCGGAGCAACATGATTGGTGAAATTGA AAACCGATCATCACATTTGATTGCTATCAAGGCAGATGTTGAAACTCAAGGGGAATTTGTCAATTCACTGATCAGAGAGGTCAATGGTGCTGTTTACCGA GACATCGAAGATGTTGTGGCATTTGTGAAGTGGCTTGATGATGAACTTGGCTTTCTTGTGGATGAAAGGGCAGTCCTGAAGCACTTTGACTGGCCAGAAA AGAAAGCTGACACATTGAGAGAAGCAGCGTTTGGGTATAGTGATCTTAAGAAGTTGGAATCTGAAGTATCATATTACAAGAATGATCCCAGAGTTCCTTG TGACATTGCACTAAAGAAAATGGTTGCTTTGTCTGAGAAGATGGAACGCACTGTTTATAACCTTCTACGAACAAGAGAGTCTTTGATGCGTAATTGCAAA GAATTCCAAATTCCCTCAGATTGGATGCTTGACAACGGAATTATTAGCAAGATAAAGTTTGGCTCAGTTAAGTTGGCAAAGAAGTACATGAAGAGGGTAG CTACAGAAATCCAGTCTAAGGCAGCAGCACTAGAGAAAGACCCTGCTCTGGACTATATGCTACTTCAAGGGGTCAGATTTGCTTTCAGAATCCATCAGTT TGCTGGAGGATTTGATGCAGAAACAATGCATGCATTTGAGGAACTTCGCAACCTTGCTCACCTGCTTAACAAAAAGTAA
AA sequence Show only first row Show all	>Potri.001G460300.1 pacid=42789857 polypeptide=Potri.001G460300.1.p locus=Potri.001G460300 ID=Potri.001G460300.1.v4.1 annot-version=v4.1 MREENPVETKTKATRFADQNQAPKSQNTKGNSNNNASKIKSSWGSHIVKGFTADKKTKTQTITVTTKKLPLASSDITNQKNLLVNSHSRVKRSLIGDLSC SVTGSQIHPHAYQGNHRRQSSGSRDLFVELDQLRSLLQESKEREFKLQAELSELKRNGRVVDIERELEARKNEVDELCKRIGVLESEKSGLCEQVNELCL ISQKRNEEVLKREGHESSLGNLEMEVVELRRLNKELQMDKRNLACKLSSMESQKPSLAKASESDIVAKIKAEASLLRHTNEDLCKQVEGLQMSRLNEVEE LAYLRWVNSCLRDELRNSCSTMNSDKSSSPKSVERSDESAGLMSCQSSDCLEYNSKRRLNLIKKLKKWPITDEDVPNLECQDKNWVQSEDGRSPRRRHSI SGSKFCIEELVPNRRRQSDGFMCIKEMENEVELVSSEKYEFDIIQRPQILAYCQETKKILGPLDVEKRALRVPNPPPRPSCSVSGPKEEGSAQVSLPPLP PPPPPPPPPPKFSVKNTTAGVVQRAPQVVEFYHSLMKRDSRKESSNGGICDASGVANVRSNMIGEIENRSSHLIAIKADVETQGEFVNSLIREVNGAVYR DIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYSDLKKLESEVSYYKNDPRVPCDIALKKMVALSEKMERTVYNLLRTRESLMRNCK EFQIPSDWMLDNGIISKIKFGSVKLAKKYMKRVATEIQSKAAALEKDPALDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLAHLLNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.001G460300 [exp]	0	1
AT5G49880			mitotic checkpoint family prot...		Potri.004G228900 [exp]	1.41	0.9547
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	9.38	0.9478
					Potri.001G407200 [exp]	11.48	0.9461
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	15.77	0.8305
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	16.43	0.9381
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	16.85	0.9424
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	16.91	0.8726
AT5G48310			unknown protein		Potri.014G172000 [exp]	17.17	0.9417
AT4G17000			unknown protein		Potri.001G287800 [exp]	17.32	0.9323
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	17.66	0.9399

Compare expression of checked genes

Potri.001G460300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.