Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30670 122 / 7e-33 bHLH bHLH052 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G34820 116 / 1e-30 bHLH bHLH053 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 69 / 4e-13 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 62 / 2e-11 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G43175 58 / 9e-10 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 60 / 1e-09 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT1G27740 57 / 2e-09 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT1G66470 56 / 9e-09 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 56 / 9e-09 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT2G14760 56 / 1e-08 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157700 [exp] 416 / 2e-147 AT2G34820 121 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 71 / 3e-14 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 67 / 5e-13 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 66 / 1e-12 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 64 / 2e-12 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 64 / 4e-12 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.001G191800 [exp] 66 / 9e-12 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G126800 [exp] 58 / 2e-09 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.005G138900 [exp] 57 / 2e-09 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038432 [exp] 136 / 2e-38 AT1G30670 108 / 4e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005451 [exp] 123 / 1e-33 AT1G30670 115 / 4e-31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 70 / 1e-13 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 67 / 6e-13 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 67 / 9e-13 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 63 / 1e-11 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 63 / 8e-11 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 58 / 3e-09 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10033592 [exp] 57 / 3e-09 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10017634 [exp] 56 / 7e-09 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G461000.1 pacid=42792423 polypeptide=Potri.001G461000.1.p locus=Potri.001G461000 ID=Potri.001G461000.1.v4.1 annot-version=v4.1 ATGATTCTATCCTCCATGGCTCTGAGCTTCTGTTCAAACCTGGGATCATCACTTCAGCATCACAGCCTTCCAGAGTTAACCGCCTATCCACAAGGCAGCG TAGAGATAGGAAATCATGAGCTCTTTGGTTGTAATGACAACCTGATGTTGTCAGATTCTTTCATCAACCCTTTGTATGACGTTGAGGATCAGCTATTTTA CTCAGATAGCTACACCAATCTCCTCCCATTCTTCTCTTCTCCTTCAGATAACACAAGCTCTCTCTCCCCCGAAACCTCTCCTCTTGAAGATTTCGAGTCC TACGCATGCCCGAAACGCCAAAAACTCTACACAGACCATTTCAACACAAAATTTGCAACAAGTTTCTTTGAAGGATATGTGCCGAATCCCAATCCAGGAC CCCCAGAATTCTTGCCAGAAATCCCAGTTCTAGATCCTAAGTTTCAGGTTCCAACAAACTTCAATGTTGGGAGGACTGAGAGTCTGATGGATTCAAAGAA ACCAAGCACAGGAGTCAGCTTGTCTGCGCAGAGCATCGCTGCGCGTGAGAGGAGAAGGAAGATTACTGAGAAGACACAGCAGCTTGGAAAGCTGATTCCT GGTGGAAATAAGATGAATACTGCTGAAATGTTCCAAGCTGCTTCCAAGTATGTCAAGTTCTTGCAGGCTCAAATTGGAATTCTTGAACTCACGGGGACTA CTCAGGAAAACAGAGAGGCAATGCATACTCAAGAACTTCAAACTCTTGTAACGTCTCCAACAATTCAAGAGAAGTTGTACTTAGAGCAAAAGTGCTTGGT TCCAAGAGATTTTGTTCAAACCATTGCCAATGATTGTGAGATCCAAGCAAAACCTTTGAATATCGTAGAGGAGATCGATCAAGAGTTTCTGGGGGAGCAA TTTCTTGGATAG
AA sequence Show only first row Show all	>Potri.001G461000.1 pacid=42792423 polypeptide=Potri.001G461000.1.p locus=Potri.001G461000 ID=Potri.001G461000.1.v4.1 annot-version=v4.1 MILSSMALSFCSNLGSSLQHHSLPELTAYPQGSVEIGNHELFGCNDNLMLSDSFINPLYDVEDQLFYSDSYTNLLPFFSSPSDNTSSLSPETSPLEDFES YACPKRQKLYTDHFNTKFATSFFEGYVPNPNPGPPEFLPEIPVLDPKFQVPTNFNVGRTESLMDSKKPSTGVSLSAQSIAARERRRKITEKTQQLGKLIP GGNKMNTAEMFQAASKYVKFLQAQIGILELTGTTQENREAMHTQELQTLVTSPTIQEKLYLEQKCLVPRDFVQTIANDCEIQAKPLNIVEEIDQEFLGEQ FLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Potri.001G461000 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	23.40	0.6576
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	29.59	0.6543
					Potri.018G064450 [exp]	123.99	0.5288
AT3G22490			Seed maturation protein (.1)		Potri.005G048000 [exp]	160.19	0.5895	Pt-PM24.1
AT4G33230			Plant invertase/pectin methyle...		Potri.001G209000 [exp]	186.89	0.4840
					Potri.005G163950 [exp]	247.38	0.5292
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.008G183100 [exp]	249.81	0.4857

Compare expression of checked genes

Potri.001G461000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.