Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44510 266 / 7e-88 CDK inhibitor P21 binding protein (.1) AT5G03830 152 / 3e-44 CDK inhibitor P21 binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004757 [exp] 301 / 1e-97 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13862 [poplar] [flax] BCIP p21-C-terminal region-binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G461100.7 pacid=42791978 polypeptide=Potri.001G461100.7.p locus=Potri.001G461100 ID=Potri.001G461100.7.v4.1 annot-version=v4.1 ATGCCAAGAAAGCCAACAAGGCGTCGTAGATCATTGATAGCTAGGCCCTTGACCTTTGCTCCGTTTTCGCGTTCACTTGCTCATCTTCATTCTACATTCA TGCCAAAGCATCAAATGCTTGGCAGTAAAGTCCCTGGGTCTCCCTCCCACAATGAAGGTGGTGCAGTGGTTAAGAAGACTTCAAAAGAAAAGATTGAGCA GTCTGAGTCTTCCGAGGAAGAAGAGTTTGGGGGAGAGGTCCAAGCAGACTTTGCATTCTTTGATCCAAAACCTGACGACTTTCATGGAGTGAAGATCTTG CTGCAATCATACCTTGATAATACGGAATGGGATTTGAGTGGTTTTGTAGACTTGATATTGGAACAGACCACAGTAGGGACGGTTGTTAAAATTGAGGATG ATGAAGATAATGGACTTTTCTCTGTTGTTTCTGCCCTTAACTTGGGGAGATATAAGGATCATAAATGTATTGCAGATCTCAAGGAGTACCTGCTAAAACT ATGCCTGGAGAAAAGCATAAAAGGAGATCTGAGAGTTCTTTTGGGAGAACAAGCACATAATGTGGGTCTTTTGGTCTCTCGGCGAGTTGTTAATCTTCCA CCCCAGCTTTTGCCACCTCTTTATGATTCCCTGTTTGATGAAATCTCTTGGGCTACAGAAGATGAGCCAACAGAGGAGCTCCGGAATTCCTTCTGTTTTA ATTCCTATGTACTAGTTAGCAAAATGTACAAGCACAAGAATGCAGACAAGAAAAACAGGCTAAGTAGTGATAGTGAGGAAGCAATTATATATGTGAATCC TGAAGATGAAATTTTTCACAAGCTCAGCTTGTGGTCCTTCAACTTTCCTTTTCATGCCGAGCAGGTTACAGCTCGTGAGCTAAAAAACTACCGGCCAATG GGATTAGTAATGGCTGTTGAGGCAGATAAAATTTCTACATTCCGAGAGCAGCTTCGTTCATTGATTGATGAGCCATAA
AA sequence Show only first row Show all	>Potri.001G461100.7 pacid=42791978 polypeptide=Potri.001G461100.7.p locus=Potri.001G461100 ID=Potri.001G461100.7.v4.1 annot-version=v4.1 MPRKPTRRRRSLIARPLTFAPFSRSLAHLHSTFMPKHQMLGSKVPGSPSHNEGGAVVKKTSKEKIEQSESSEEEEFGGEVQADFAFFDPKPDDFHGVKIL LQSYLDNTEWDLSGFVDLILEQTTVGTVVKIEDDEDNGLFSVVSALNLGRYKDHKCIADLKEYLLKLCLEKSIKGDLRVLLGEQAHNVGLLVSRRVVNLP PQLLPPLYDSLFDEISWATEDEPTEELRNSFCFNSYVLVSKMYKHKNADKKNRLSSDSEEAIIYVNPEDEIFHKLSLWSFNFPFHAEQVTARELKNYRPM GLVMAVEADKISTFREQLRSLIDEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44510			CDK inhibitor P21 binding prot...		Potri.001G461100 [exp]	0	1
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.009G076400 [exp]	1.41	0.8709
AT1G18850			unknown protein		Potri.015G064300 [exp]	5.19	0.8783
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.009G149400 [exp]	8.12	0.8548	HD2.2,HDT901
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	8.48	0.8694
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	10.00	0.8653	TUFA.4
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.014G016300 [exp]	10.48	0.8298
AT2G19080			metaxin-related (.1)		Potri.006G077100 [exp]	11.53	0.8547
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	15.87	0.8178
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	18.57	0.8169
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Potri.016G024300 [exp]	22.51	0.7938

Compare expression of checked genes

Potri.001G461100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.