Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30680 314 / 8e-101 toprim domain-containing protein (.1) AT1G30660 300 / 4e-100 nucleic acid binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461300 [exp] 355 / 7e-117 AT1G30680 828 / 0.0 toprim domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023380 [exp] 441 / 1e-154 AT1G30680 294 / 1e-97 toprim domain-containing protein (.1) Lus10038433 [exp] 434 / 3e-153 AT1G30680 297 / 5e-100 toprim domain-containing protein (.1) Lus10023379 [exp] 339 / 7e-111 AT1G30680 855 / 0.0 toprim domain-containing protein (.1) Lus10038434 [exp] 336 / 2e-109 AT1G30680 852 / 0.0 toprim domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [poplar] [flax] Toprim-like PF13662 [poplar] [flax] Toprim_4 Toprim domain
Representative CDS sequence Show only first row Show all	>Potri.001G461200.1 pacid=42790895 polypeptide=Potri.001G461200.1.p locus=Potri.001G461200 ID=Potri.001G461200.1.v4.1 annot-version=v4.1 ATGGCAACATCAGCTCTCAGTCTCACTAATCAGTTATGTCGCTTCTCTTCTGAAGTACACTTCTTGTTCATAAACAAGAATTTCTCAACACCAAAATCAA CAAGATTAATTAGTCATGTTTGGTCTTACTCTAAAACTACCAGGATTCCAGCTTTACACTCAGCTAATGGTTATATAAAGGAGGCTATAGAAGAGGGGGA GGGTATGGTTGATAGTGATAAAGTAAGGGTGTTAAAGCAGAAAATAGAGGTTCTTGGGATTAAATGTGATGATTCTTGCTTTCCTGGACAGTACTATCAC TTGCTTTGTCCCAAGTGCAAAGGTGGCAAGACCATGGAGAGGAGCTTATCATTTAATATCACCCAAGATGTGGATGTTGCAATGTGGAGATGTTTCGGGA CTAGTTGTGGATGGACAGGCCAGGCCTTTGCTGATAGCAGGATGCCAATCGCTGGAGTGAACAAAATTTTCAAAGTTAAGTCCTCCAAGCAAGTAACCCC AGAGAACGTAGTTTTGGAACCATTGGGTGACAAGCTGATTGCATACTTTAGTGAAAGAATGATTTCTGAGGAAACTCTGCGGAGAAATGCAGTTATGCAG ATGTCCGGTGATAAGTATATTATTGCTTTTACATACAGACAAAATGGGGCGATTGTTGGTTGCAAATACCGAACCATGGAGAAAAGGTTTTGGCAGGAGA AGGACACAAGAAAATGGTTATATGGACTAGATGACATAAATGAAGCCACCGAAATTATTATTGTTGAAGGGGAAATAGATAAGCTTTCAGTGGAGGAAGC TGGCTTCCGTAATTGTGTTAGTGTTCCTGGTGGCGCACCACAAATAGTTTCTGCGAAAGATTTACCATCCATACAGAAGGACAGAGCGTATCAGTATCTA TGGAACAGCAAAGAGTACTTGGATAAACTATCTCGCATTGTCCTGGCAACTGATGGCGACACAAGTGGGCGATCGTTGGCTGAAGAGTTAGCACGCCGGC TGGGAAAAGAAAGATGTTGGGTGGTACGTTGGCCGGAGAAAGATGACTCACGGTGCTTCAAAGATGCAAATGAGGTTCTGAAGTGTTTGGGACCAGCTGC TTTGAAGGGAGTAATTCAAACCGCAGAAAAATATGAGGCTTGTCAGCTACATCGTCTGAATTAG
AA sequence Show only first row Show all	>Potri.001G461200.1 pacid=42790895 polypeptide=Potri.001G461200.1.p locus=Potri.001G461200 ID=Potri.001G461200.1.v4.1 annot-version=v4.1 MATSALSLTNQLCRFSSEVHFLFINKNFSTPKSTRLISHVWSYSKTTRIPALHSANGYIKEAIEEGEGMVDSDKVRVLKQKIEVLGIKCDDSCFPGQYYH LLCPKCKGGKTMERSLSFNITQDVDVAMWRCFGTSCGWTGQAFADSRMPIAGVNKIFKVKSSKQVTPENVVLEPLGDKLIAYFSERMISEETLRRNAVMQ MSGDKYIIAFTYRQNGAIVGCKYRTMEKRFWQEKDTRKWLYGLDDINEATEIIIVEGEIDKLSVEEAGFRNCVSVPGGAPQIVSAKDLPSIQKDRAYQYL WNSKEYLDKLSRIVLATDGDTSGRSLAEELARRLGKERCWVVRWPEKDDSRCFKDANEVLKCLGPAALKGVIQTAEKYEACQLHRLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	0	1
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	3.60	0.8537
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	4.00	0.8834
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	4.69	0.8543
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	4.89	0.8588
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	10.77	0.8775
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	11.61	0.8516
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	13.41	0.8743
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	14.00	0.8424	APG3.1
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	15.23	0.8401
AT3G01510		LSF1	like SEX4 1 (.1)		Potri.001G349000 [exp]	15.87	0.8494

Compare expression of checked genes

Potri.001G461200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.