Plant FIBer expression Database

Potri.001G461300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30680 829 / 0 toprim domain-containing protein (.1)
AT1G30660 320 / 9e-104 nucleic acid binding;nucleic acid binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G461200
[exp]
326 / 3e-105 AT1G30680 313 / 1e-100 toprim domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023379
[exp]
948 / 0 AT1G30680 855 / 0.0 toprim domain-containing protein (.1)
Lus10038434
[exp]
941 / 0 AT1G30680 852 / 0.0 toprim domain-containing protein (.1)
Lus10038433
[exp]
302 / 7e-97 AT1G30680 297 / 5e-100 toprim domain-containing protein (.1)
Lus10023380
[exp]
298 / 2e-94 AT1G30680 294 / 1e-97 toprim domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13481 AAA_25 AAA domain
CL0413 Toprim-like PF13662 Toprim_4 Toprim domain
Representative CDS sequence
>Potri.001G461300.1 pacid=42792666 polypeptide=Potri.001G461300.1.p locus=Potri.001G461300 ID=Potri.001G461300.1.v4.1 annot-version=v4.1
ATGCTTGCTTTTGCCATTCACAAACCTCACGTCAATTTGAACAAAAAGCTTGCTTTTTTATCTTCTTTTCACAACTACATGGGCTCTAAATTCTTGCTTA
AACCCACCACTAGTACTATTCCTACTCCTTTGCCTCTGTTACCTTCTTCAAATAAACAACAATATCGTACCTTTAAAAGATTGTCACCTGTTTTTTGTTC
TTCAAAACCCACCTCTAAGTTTAACCGTTCTTTGCTTACTCAAACTAATGGCCTCCCTTTTTCTCCTCTTCCTGCCCCAGTTTATGGTTTGGACCCAGAA
GTGAAGAAATCAAAGTTGGAGATTTTAAGGTTTAAATTAGCAGAGGTGGGGATTGAACTAGATCACTTTGCTCCTGGACAGTACAATGCCTTAACTTGTC
CAATGTGCAAAGGCGGTGGTTCAAAAGAGAAATCCTTTTCTCTTTTCATCAGTGCAGATGGGGGAAATGCATCCTGGAATTGCTTTCGAGCAAAATGTGG
GTGGAATGGTGGAACAAAACCCTTTGCAGGTAGCAAATCTACATATGGAACCTCACTCAAACTTTCCAAAGTTAAGGAGATAAGAGAAATCACAGAGCAG
AGTCTGGAATTGGAACCGCTATGCGATGAGCTTGTTTGTTATTTCAAGGAGCGGTTAATATCAGCAGAGACGCTGGCGAGAAATCAAGTTATGCAGAAAG
GTTATGGCGACCGTGGCCAGGTTGCTATTGCTTTCACTTATCGGCGGAATGGAGTGCTTGTAAGCTGCAAGTATCGGGACATCAACAAGAGATTTTGGCA
GGAAAAGGATACAAAAAAAGTATTTTACGGGCTAGATGATATAAAGGGAGCAGATGAAATCATCATTGTTGAAGGTGAAATGGACAAGCTTGCAATGGAA
GAAGCTGGATTTCGTAATTGTGTGAGTGTCCCTGATGGTGCTCCTCCATCAGTTTCTCCAAAGGAATTACCACCTAACCAGGAGGACACAAAATATCAGT
ATCTCTGGAATTGCAAAGAGTACTTGGACAAGGTATCTCGCATAATACTTGCCACTGATGGAGATCCACCGGGTCAAGCATTGGCTGAAGAGCTGGCGCG
CCGCCTTGGAAGGGAAAGATGCTGGCGAGTCAAATGGCCAAAGAAAAATACAGATGAACATTTCAAGGATGCAAATGAGGTTCTCATGTTTTCGGGGCCA
CTTGCGCTGAGGGATATAATTGAAAATGCTGAGCTATACCCTATACGTGGATTGTTCCAATTTAGCGATTACTTCCCTGAGATTGATGCGTATTATAATC
GCACTCTTGGGTATGAATTTGGTGCCTCAACTGGGTGGACAGCTCTAAATGAAATATATAATGTTATGCCAGGAGAGTTGACTTTGGTAACCGGGGTTCC
CAATTCAGGCAAGAGTGAGTGGATCGATGCTCTATTATGCAATCTTAATGAAAGTGTTGGCTGGAAATTCGCACTTTGCTCCATGGAGAACAATGTCCGG
CAACATGCTAGGAAACTTTTGGAGAAACACATGAAGAAGCCCTTTTTTGATGCACGTTATGGAGAATCTGCTGAACGTATGAGTGCCAAGGAGTTAGAAG
AAGGGAAGCAGTGGTTGAGCGATACTTTTTATCTCATAAGATGTGAAGATGATGCGCTTCCAAATATAAAATGGGTTCTTGACCTTGCAAGAGCTGCAGT
TCTGAGACATGGGGTCCGTGGACTAGTAATTGATCCTTACAATGAGCTCGACCATCAACGCCCTCCTAACATGACCGAGACTGAGTATGTTAGTCAGATG
CTTACACTGATCAAAAGGTTTGCTCAACATCATGCTTGTCATGTTTGGTTAGTGGCGCATCCGAGACAGTTGCAAAATTGGACCGGCCAACCTCCTAATC
TATATGATATCAGTGGCAGTGCACACTTTGTTAACAAATGTGACAACGGCATTGTCATTCATCGTAATAGGAATCCAAATGCTGGACCTATTGATCAAGT
ACAGGTTTTGGTCAGGAAGGTTAGAAATAAGGTAGCTGGGACCATAGGAGATGCCTTCCTGTCATATAACAGAGTAACTGGTGAATTCATGAATGTTGAT
AAATCTACTGGAAGCGACAATCAAGGCTTTAAACCACTTAGAAGATAG
AA sequence
>Potri.001G461300.1 pacid=42792666 polypeptide=Potri.001G461300.1.p locus=Potri.001G461300 ID=Potri.001G461300.1.v4.1 annot-version=v4.1
MLAFAIHKPHVNLNKKLAFLSSFHNYMGSKFLLKPTTSTIPTPLPLLPSSNKQQYRTFKRLSPVFCSSKPTSKFNRSLLTQTNGLPFSPLPAPVYGLDPE
VKKSKLEILRFKLAEVGIELDHFAPGQYNALTCPMCKGGGSKEKSFSLFISADGGNASWNCFRAKCGWNGGTKPFAGSKSTYGTSLKLSKVKEIREITEQ
SLELEPLCDELVCYFKERLISAETLARNQVMQKGYGDRGQVAIAFTYRRNGVLVSCKYRDINKRFWQEKDTKKVFYGLDDIKGADEIIIVEGEMDKLAME
EAGFRNCVSVPDGAPPSVSPKELPPNQEDTKYQYLWNCKEYLDKVSRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNTDEHFKDANEVLMFSGP
LALRDIIENAELYPIRGLFQFSDYFPEIDAYYNRTLGYEFGASTGWTALNEIYNVMPGELTLVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENNVR
QHARKLLEKHMKKPFFDARYGESAERMSAKELEEGKQWLSDTFYLIRCEDDALPNIKWVLDLARAAVLRHGVRGLVIDPYNELDHQRPPNMTETEYVSQM
LTLIKRFAQHHACHVWLVAHPRQLQNWTGQPPNLYDISGSAHFVNKCDNGIVIHRNRNPNAGPIDQVQVLVRKVRNKVAGTIGDAFLSYNRVTGEFMNVD
KSTGSDNQGFKPLRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30680 toprim domain-containing prote... Potri.001G461300
[exp]
0 1
AT4G10650 P-loop containing nucleoside t... Potri.012G083100
[exp]
4.47 0.8901
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.010G200200
[exp]
4.47 0.8981
AT1G50840 PolIA, POLGAMMA... polymerase I A, polymerase gam... Potri.011G136900
[exp]
5.19 0.8920
AT2G03880 REME1 required for efficiency of mit... Potri.004G208000
[exp]
5.47 0.9111
AT4G16570 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN A... Potri.003G076500
[exp]
6.63 0.8994
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Potri.010G023100
[exp]
7.34 0.8963 Pt-CARB.1
AT1G78930 Mitochondrial transcription te... Potri.007G001800
[exp]
7.74 0.9087
AT3G23710 AtTic22-III translocon at the inner envelo... Potri.002G236000
[exp]
11.66 0.8959
AT4G20020 unknown protein Potri.003G015100
[exp]
11.83 0.8961
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Potri.010G171300
[exp]
13.26 0.8703

Potri.001G461300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.