Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 496 / 5e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 371 / 2e-123 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 374 / 2e-122 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 340 / 2e-112 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 308 / 9e-97 PATL2 PATELLIN 2 (.1) AT1G72150 293 / 3e-92 PATL1 PATELLIN 1 (.1) AT1G01630 77 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55840 72 / 1e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G08690 68 / 2e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 61 / 9e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106000 [exp] 411 / 2e-137 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 403 / 3e-134 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 402 / 5e-134 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 397 / 3e-132 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 395 / 1e-131 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 391 / 4e-130 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 387 / 6e-129 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 375 / 9e-126 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 352 / 3e-117 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038435 [exp] 528 / 0 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 420 / 2e-140 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 394 / 5e-132 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 354 / 2e-119 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001269 [exp] 347 / 6e-115 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 341 / 8e-114 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10003552 [exp] 345 / 3e-113 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001539 [exp] 337 / 9e-113 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031175 [exp] 282 / 1e-92 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033895 [exp] 260 / 3e-78 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G461400.1 pacid=42787979 polypeptide=Potri.001G461400.1.p locus=Potri.001G461400 ID=Potri.001G461400.1.v4.1 annot-version=v4.1 ATGACTGTTGAGGTTAAGGTTGAAGAAACTAAGGTGGCTGAGGTTGTTGTGGTTCCTCAAGAAGAACCCGAGAAGGTGGTTGTTGTTGAAGAGAGAAAGA ATGATGTTAATGGAGATGTGGAGGTGAAGGAAGTGGATGCTGCTGATAATGATGGGCCTAAAACAGTTCAAAAGAGTTCTTCTTACAAGGAAGAAAGCAA TTTTCTTTCTGATCTTAAGGAGTTTGAGAGGAAGGCCTTGAGTGAGCTGAAATTGAAACTGGAAGAGGCAATTCTTGGAAACAGTTTGTTCAAGAAAGAA GGGGCAAAGAAGAAGGAGAAGGAGGTGGAGAAGGAGAAGGAGGTGGAGAAGCCAGTGGAAGAAGAGAAAGAGAAGGAAAAAGAAACCAAGGAAGGAGAAG AGAGTGGGGAACAAGAAGGTGAAAAGAAAGAAGATGTGAAACCAGAAGGAGATAATGTGAAGGAAAAAACAGTCCTGGAATGTGAAGAAGAGAAAAGTGA GGTTGTTATTGAAGAAAAAAGTGAAGAAATTGACAGGGATATTTCCATTTGGGGAGTCCCTCTTTTCCCTAGCAAGGGATCAGAAGGAACTGATGTGGTC TTATTGAAGTTCTTAAGGGCTAGAGATTTCAAAGTTAACGATGCACTGGAGATGCTCAAGAAGACCCTTCAATGGAGGAAAGAATCCAGCATTGATTCAC TCTTGGATGAAGAAATAGGAGTGGATCTAAGCTCGGCATTCTACATGAATGGCATCGATCGCGAAGGCCACCCTGTGTGTTACAACATCTATGGGGTGTT TGAGAATGAGGAGCTTTATGCAAAGGCATTTGGAGATGAAGAGAAGCGCAAGCAGTTCTTGAGATGGAGATTTCAATTAATGGAGAAAGGTATTCAAAAG CTTGATTTGAGGCCTGGTGGTATTGCTTCTTTGCTTCAAATCAGTGATCTCAAGAATTCTCCTTCCCCATCAAAGAAAGAGCTCAGGACTGCCATGAGCA AAGCTGTCACCCTTTTGCAGGACAATTATCCAGAATTTGTTGCAAAAAATATATTCATAAATGTTCCATTTTGGTATTATGCTTTCAACGCCCTGCTATC TCCTTTCTTGGCTCAAAGAACCAAGAGCAAATTTGTCGTTGTTCGCCCTGCCAAGACCACCGAGACATTGCTCAAGTATGTTCAGGCCGAGGAAATCCCT GTCCAATATGGTGGCTTCAAGAGGGAGAATGATTTCGAGTTCTCCAGCGAAGATGGTGAAGTTTCAGAACTTGTAATCAAAGCTGGATCAACTGAAACCA TTGAGATCCCTGCAGCAGAGGTTGGAGCCACATTGCTTTGGGACCTGACAGTTGTGGGATGGGAAGTGAATTACAAGGAGGAATTTGTGCCAAGTGATGA AGCTTCCTACACCATCATCATCCAAAAGGGCAAGAAAATGAGCTCAAATGAAGAGCCAACTCGCAACACTTTCAGGAACAATGAACCTGGAAAGGTAGTT CTGACCATTCAGAATTGGTCAAGCAAGAAGAAGAGGGTCCTATACCGATACAAGACCAAGAAGAATGCTTCCTATTGA
AA sequence Show only first row Show all	>Potri.001G461400.1 pacid=42787979 polypeptide=Potri.001G461400.1.p locus=Potri.001G461400 ID=Potri.001G461400.1.v4.1 annot-version=v4.1 MTVEVKVEETKVAEVVVVPQEEPEKVVVVEERKNDVNGDVEVKEVDAADNDGPKTVQKSSSYKEESNFLSDLKEFERKALSELKLKLEEAILGNSLFKKE GAKKKEKEVEKEKEVEKPVEEEKEKEKETKEGEESGEQEGEKKEDVKPEGDNVKEKTVLECEEEKSEVVIEEKSEEIDRDISIWGVPLFPSKGSEGTDVV LLKFLRARDFKVNDALEMLKKTLQWRKESSIDSLLDEEIGVDLSSAFYMNGIDREGHPVCYNIYGVFENEELYAKAFGDEEKRKQFLRWRFQLMEKGIQK LDLRPGGIASLLQISDLKNSPSPSKKELRTAMSKAVTLLQDNYPEFVAKNIFINVPFWYYAFNALLSPFLAQRTKSKFVVVRPAKTTETLLKYVQAEEIP VQYGGFKRENDFEFSSEDGEVSELVIKAGSTETIEIPAAEVGATLLWDLTVVGWEVNYKEEFVPSDEASYTIIIQKGKKMSSNEEPTRNTFRNNEPGKVV LTIQNWSSKKKRVLYRYKTKKNASY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	0	1
AT1G49870			unknown protein		Potri.001G296700 [exp]	3.00	0.9111
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.002G207500 [exp]	6.48	0.8796
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	8.71	0.8337
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.016G013700 [exp]	9.16	0.8836	GDI1.2
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	9.94	0.8864
					Potri.001G042100 [exp]	10.90	0.7991
AT3G55420			unknown protein		Potri.010G203900 [exp]	15.49	0.8420
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	15.87	0.8357
AT1G04030			unknown protein		Potri.002G258501 [exp]	16.37	0.8969
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	18.76	0.8493

Compare expression of checked genes

Potri.001G461400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.