Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 315 / 8e-106 FAD-binding Berberine family protein (.1) AT1G30710 277 / 8e-91 FAD-binding Berberine family protein (.1) AT1G34575 277 / 1e-90 FAD-binding Berberine family protein (.1) AT1G30720 265 / 4e-86 FAD-binding Berberine family protein (.1) AT1G30730 260 / 4e-84 FAD-binding Berberine family protein (.1) AT4G20830 248 / 1e-79 FAD-binding Berberine family protein (.1.2) AT1G01980 248 / 2e-79 ATSEC1A FAD-binding Berberine family protein (.1) AT5G44400 245 / 3e-78 FAD-binding Berberine family protein (.1) AT1G26380 244 / 5e-78 FAD-binding Berberine family protein (.1) AT1G26410 244 / 1e-77 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462200 [exp] 502 / 5e-179 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462532 [exp] 467 / 2e-169 AT1G30700 306 / 5e-102 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 466 / 5e-165 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 392 / 1e-135 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 302 / 2e-100 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 297 / 2e-98 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 291 / 4e-96 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 287 / 1e-94 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 280 / 5e-92 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035466 [exp] 294 / 3e-97 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 288 / 1e-94 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 279 / 1e-91 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 273 / 2e-90 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038440 [exp] 270 / 1e-87 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 269 / 1e-87 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023373 [exp] 251 / 1e-83 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 245 / 4e-78 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 243 / 8e-78 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 241 / 2e-76 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G462300.1 pacid=42793514 polypeptide=Potri.001G462300.1.p locus=Potri.001G462300 ID=Potri.001G462300.1.v4.1 annot-version=v4.1 ATGGACGTCGTAAACAGTACTACTATCGGTGAAAAGACGGTGAGGACTACATTCCGAGCATTGTTTCTCGGAGACTCTGAAAGACTCCTTTCTATCACGA ATGCAAGTTTCCCTAAACTGGGTTTGCTTCGGTCAGACTGCATCGAAATGAGTTGGCTTGAATCAGTCCTTTTCTGGACAGATTTCCCTCTTGGGACACC AACTGATGCTTTGCTAAGTAGAACACCACAATCACTGGTTCACTTGAAAAGGAAATCAGATTATGTACAAAAGCCAATCCCAAGGGATGGTTTGGAGGGG ATTTGGAAGAAAATGATTGAGCTCCAAGTGCCGAAGCTTACTTTCAATCCTTATGGAGGAAAAATGTGGGAGATTCCAGCAACTCAAAGACCTTTTCCAC ATAGAGCTGGGAACTTATGGCAGATTCAGTATGCAACAAATTGGAATGAAGGTGGTCAAGAAGAAGCAAATTATTACATAGATTTGACAAGGCAACTCTA TAGTTACATGACTCCCTTCGTGTCCAAGAATCCTAGGCAAGCATTCCTTAACTATAGAGACCTCGACTTGGGTATCAATCACAACGGCAAGGAAAGCTAC TTGGAAGGAAGAGTTTATGGAATCAAGTATTTTCAGGAGAATTTCAACAGGTTGGTTAAAATCAAGACTAAGGTTGATCCAGGTAATTTCTTTAGGAATG AACAAAGTATCCCTACTTTTCCATATAGGAAAAAGTAG
AA sequence Show only first row Show all	>Potri.001G462300.1 pacid=42793514 polypeptide=Potri.001G462300.1.p locus=Potri.001G462300 ID=Potri.001G462300.1.v4.1 annot-version=v4.1 MDVVNSTTIGEKTVRTTFRALFLGDSERLLSITNASFPKLGLLRSDCIEMSWLESVLFWTDFPLGTPTDALLSRTPQSLVHLKRKSDYVQKPIPRDGLEG IWKKMIELQVPKLTFNPYGGKMWEIPATQRPFPHRAGNLWQIQYATNWNEGGQEEANYYIDLTRQLYSYMTPFVSKNPRQAFLNYRDLDLGINHNGKESY LEGRVYGIKYFQENFNRLVKIKTKVDPGNFFRNEQSIPTFPYRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30700			FAD-binding Berberine family p...		Potri.001G462300 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	2.82	0.9580
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	7.48	0.9488
AT1G30700			FAD-binding Berberine family p...		Potri.001G462532 [exp]	13.49	0.9659
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.010G213400 [exp]	14.89	0.9588	2
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	20.59	0.9296
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	24.28	0.9561
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	31.46	0.9215
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	33.67	0.8979
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080333 [exp]	33.85	0.9511
					Potri.017G128400 [exp]	35.69	0.9422

Compare expression of checked genes

Potri.001G462300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.