Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 647 / 0 FAD-binding Berberine family protein (.1) AT4G20840 547 / 0 FAD-binding Berberine family protein (.1) AT1G11770 546 / 0 FAD-binding Berberine family protein (.1) AT1G30720 535 / 0 FAD-binding Berberine family protein (.1) AT1G30710 533 / 0 FAD-binding Berberine family protein (.1) AT1G34575 532 / 0 FAD-binding Berberine family protein (.1) AT1G01980 518 / 2e-180 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20830 518 / 2e-180 FAD-binding Berberine family protein (.1.2) AT1G30730 515 / 1e-179 FAD-binding Berberine family protein (.1) AT1G26380 511 / 1e-177 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462200 [exp] 970 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 744 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 626 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 619 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 597 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 597 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 596 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 585 / 0 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 583 / 0 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023375 [exp] 632 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 588 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 563 / 0 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 542 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 513 / 2e-178 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 503 / 3e-174 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023365 [exp] 500 / 1e-173 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 486 / 1e-167 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023374 [exp] 479 / 2e-165 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 478 / 1e-164 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G462400.1 pacid=42788257 polypeptide=Potri.001G462400.1.p locus=Potri.001G462400 ID=Potri.001G462400.1.v4.1 annot-version=v4.1 ATGTTAAGGTCTAACATGTTCGCATTGCTTTTAGTGTTTCTCCTATCCATCTCATGGGAGGCGACTTCAGATTTAGCTCATGAAAATTTTCTCCAATGTC TTTTAAACCATTCCCAACTCACTTACCCAATCTCCACAGCAATTTACACTCCGAAAAACGAGTCATACTCATATGTCTTGCAATCTTACATTCGAAATCT TCGGTTCAACATGTCCACAACCCCGAAACCACTTCTTATTCTCACTGCATTGCGTGAATCTCATGTGCAAGCTGCCATCAGTTGTGCTCGTGAACATAAC TTGCAAATGAAAATTCGAAGTGGGGGTCATGACTATGAAGGTGTTTCTTCTGTGTCAGATGTCCCATTCTTTGTCCTCGACATGTTCAACTTTCGATCAA TTGATGTTGATGTAGCCAGTGAGACTGCTTGGATTCAAGTCGGAGCAACCCTAGGCGAAGTTTACTATAGAATTTCTGAGAAAAGCAAAGCACATGGTTT TCCAGCTAGTGTTGAACCTACAGTTGGTGTTGGTGGTCACTTCGGTGGTGGTGGATATGGCAACATGATGAGAAAATATGGCCTTTCCGTCGACAACATC ATTGATGCGAAAATGGTTGATGTTAATGGAAGACTTCTTGTTAGAAAATCTATGGGAGAAGATTTATTCTGGGCTATAACAGGTGGAGGAGGATCAAGCT TTGGAGTTGTTCTGGCATATAAAATTAACATCGTTCGTGTTCCTGAAGTTGTCACTGTTTTTCTGGTTCGAAGAAATGTCGACCAAAATGCAACAGATAT TGTTGAACAGTGGCAACAAGTTGCATACAATATTGACGATGACCTTTTCATTAGACTTACCATGAACGTCGTAAACAGTACTACTCGAATCAGTGAAAAG ACGGTGAGGACTACATTCCGAGCATTGTTTCTTGGAGACTCTGAAAGACTCCTTTCTATCATGAATGCAAGCTTCCCTAAACTGGGTTTGCTTCGGTCAG ACTGCACCGAAATGAGTTGGCTTGAATCAGTCCTTTTCTGGACAGATCCCCCTCTTGGGACACCAACTGATTTGCTAAGGAGAACACCACCATCACTGGT TCACTTTAAAAGGAAATCAGATTATGTACAAAAGCCAATCCCAAGGGATGGTTTGGAGGGAATTTGGAAGAAAATGATTGAGCTACAAGTGCCGCAGCTT ACTTTCAATCCTTATGGAGGAAAAATGTGGGAGATTCCAGCAACTGAAAGACCTTTTCCACATAGAGCTGGGAACTTATGGAAGGTTCAGTATGCAACAG ATTGGAATGAAAGCGGTCAAGAAAAAGCAAATTATTACATAGATTTGACAAGGCAACTCTATAGTTACATGACTCCCTTCGTGTCCAAGAATCCTAGGCA AGCATTCCTTAACTATAGAGACCTCGACTTGGGTATCAATCACAACGGCAAGGAAAGCTACTTGGAAGGAAGAGTTTATGGAATCAAGTATTTTCAGGAG AATTTCAACAGGTTGGTTAAAATCAAGACTAAGGTTGATCCAGGTAATTTCTTTAGGAATGAACAAAGTATCCCTACTTTTCCATAG
AA sequence Show only first row Show all	>Potri.001G462400.1 pacid=42788257 polypeptide=Potri.001G462400.1.p locus=Potri.001G462400 ID=Potri.001G462400.1.v4.1 annot-version=v4.1 MLRSNMFALLLVFLLSISWEATSDLAHENFLQCLLNHSQLTYPISTAIYTPKNESYSYVLQSYIRNLRFNMSTTPKPLLILTALRESHVQAAISCAREHN LQMKIRSGGHDYEGVSSVSDVPFFVLDMFNFRSIDVDVASETAWIQVGATLGEVYYRISEKSKAHGFPASVEPTVGVGGHFGGGGYGNMMRKYGLSVDNI IDAKMVDVNGRLLVRKSMGEDLFWAITGGGGSSFGVVLAYKINIVRVPEVVTVFLVRRNVDQNATDIVEQWQQVAYNIDDDLFIRLTMNVVNSTTRISEK TVRTTFRALFLGDSERLLSIMNASFPKLGLLRSDCTEMSWLESVLFWTDPPLGTPTDLLRRTPPSLVHFKRKSDYVQKPIPRDGLEGIWKKMIELQVPQL TFNPYGGKMWEIPATERPFPHRAGNLWKVQYATDWNESGQEKANYYIDLTRQLYSYMTPFVSKNPRQAFLNYRDLDLGINHNGKESYLEGRVYGIKYFQE NFNRLVKIKTKVDPGNFFRNEQSIPTFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	0	1
AT1G30700			FAD-binding Berberine family p...		Potri.001G462532 [exp]	1.00	0.9991
					Potri.017G128400 [exp]	2.23	0.9908
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	3.00	0.9863
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G029000 [exp]	3.16	0.9938
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G008666 [exp]	4.24	0.9930
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G020700 [exp]	4.47	0.9929
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Potri.005G091700 [exp]	6.32	0.9838
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.005G122600 [exp]	8.00	0.9879
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080333 [exp]	8.36	0.9893
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G155300 [exp]	10.58	0.9815

Compare expression of checked genes

Potri.001G462400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.