Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 273 / 2e-89 FAD-binding Berberine family protein (.1) AT4G20840 246 / 7e-79 FAD-binding Berberine family protein (.1) AT1G11770 244 / 5e-78 FAD-binding Berberine family protein (.1) AT4G20830 236 / 5e-75 FAD-binding Berberine family protein (.1.2) AT1G30710 222 / 2e-69 FAD-binding Berberine family protein (.1) AT1G34575 221 / 3e-69 FAD-binding Berberine family protein (.1) AT1G01980 218 / 3e-68 ATSEC1A FAD-binding Berberine family protein (.1) AT1G30720 214 / 8e-67 FAD-binding Berberine family protein (.1) AT1G26400 212 / 1e-65 FAD-binding Berberine family protein (.1) AT4G20820 209 / 1e-64 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462200 [exp] 424 / 2e-148 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 397 / 8e-138 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 307 / 8e-103 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 293 / 2e-97 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 285 / 5e-94 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 275 / 4e-90 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 269 / 7e-88 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 264 / 6e-86 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 259 / 5e-84 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023375 [exp] 273 / 4e-89 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 243 / 1e-77 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 240 / 2e-76 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 221 / 3e-69 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 221 / 6e-69 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 218 / 4e-68 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 214 / 2e-66 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 213 / 2e-66 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 208 / 3e-64 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 202 / 3e-62 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G462466.1 pacid=42791266 polypeptide=Potri.001G462466.1.p locus=Potri.001G462466 ID=Potri.001G462466.1.v4.1 annot-version=v4.1 ATGTTAAGGTCTAAAATGTTCGCATTGCTTTCAGTGTTTCTCCTATCCATCTCATGGGAGGCGACTTCAGATTTAGATCATGAAAATTTTCTCCATTGTC TTTTAAACCATTCCCAACCCTCTTACCCAATCTCCACAGCAATTTACACTCCGAACAATGAGTCATACTCATCTGTCTTGCAATCTTATATTCGAAATCT TCGGTTCAACATGTCCACAACCCCGAAACCACTTCTTATTCTCACTGCATTGCATGAATCTCATGTGCAAGCTGCCATCAGTTATGCTCGTGAACATAAC TTGCAAATGAAAATTCGAAGTGGGGGTCATGACTATGAAGGTGTTTCTTATGTGTCAGATGTCCCATTCTTTGTCCTCGACATGTTCAACCTTCGATCAA TTGATGTTGATGTAGCTAGTGAGACTGCTTGGATTCAAGTCGGAGCAACCCTAGGCGAAGTTTACTATAGAGTTTCTGAGAAAAGCCAAGCACATGGTTT TCCAGCTAGTGTTGAACCTACAGTTGGTGTTGGTGGTCACTTCGGTGGTGGTGGATATGGCAACATGATGAGAAAATATGGCCTTTCCGTCGACAACATC ATTGATGCGAAAATGGTTGATGTTAAAGGAAGACTTCTTGATAGAAAATCAATGGGAGAAGATTTATTCTGGGTGTCATCACCCAATTTTGGGTGA
AA sequence Show only first row Show all	>Potri.001G462466.1 pacid=42791266 polypeptide=Potri.001G462466.1.p locus=Potri.001G462466 ID=Potri.001G462466.1.v4.1 annot-version=v4.1 MLRSKMFALLSVFLLSISWEATSDLDHENFLHCLLNHSQPSYPISTAIYTPNNESYSSVLQSYIRNLRFNMSTTPKPLLILTALHESHVQAAISYAREHN LQMKIRSGGHDYEGVSYVSDVPFFVLDMFNLRSIDVDVASETAWIQVGATLGEVYYRVSEKSQAHGFPASVEPTVGVGGHFGGGGYGNMMRKYGLSVDNI IDAKMVDVKGRLLDRKSMGEDLFWVSSPNFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30700			FAD-binding Berberine family p...		Potri.001G462466 [exp]	0	1
AT1G30700			FAD-binding Berberine family p...		Potri.001G462200 [exp]	1.00	0.9338
AT1G02460			Pectin lyase-like superfamily ...		Potri.014G115700 [exp]	5.47	0.8754
AT2G05910			Protein of unknown function (D...		Potri.006G140900 [exp]	6.48	0.8772
AT1G78850			D-mannose binding lectin prote...		Potri.001G391300 [exp]	13.41	0.8042
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150400 [exp]	15.58	0.8088
AT5G50000			Protein kinase superfamily pro...		Potri.012G079000 [exp]	19.07	0.7474
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G164200 [exp]	19.10	0.8161
					Potri.002G091600 [exp]	24.49	0.8122
AT5G20950			Glycosyl hydrolase family prot...		Potri.019G037400 [exp]	25.41	0.7943
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	26.53	0.7985	Pt-KCS1.1

Compare expression of checked genes

Potri.001G462466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.