Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01980 658 / 0 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20840 649 / 0 FAD-binding Berberine family protein (.1) AT1G11770 643 / 0 FAD-binding Berberine family protein (.1) AT4G20830 625 / 0 FAD-binding Berberine family protein (.1.2) AT1G30740 590 / 0 FAD-binding Berberine family protein (.1) AT1G30700 559 / 0 FAD-binding Berberine family protein (.1) AT1G30710 509 / 5e-177 FAD-binding Berberine family protein (.1) AT1G34575 502 / 4e-174 FAD-binding Berberine family protein (.1) AT1G26420 489 / 4e-169 FAD-binding Berberine family protein (.1) AT1G26390 486 / 4e-168 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158500 [exp] 873 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 625 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 602 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 596 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 591 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 566 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 564 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 555 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 547 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023365 [exp] 585 / 0 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 570 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 549 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 546 / 0 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 532 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 497 / 4e-172 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 486 / 7e-168 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 480 / 4e-165 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 477 / 3e-164 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023363 [exp] 468 / 5e-161 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G462600.2 pacid=42791083 polypeptide=Potri.001G462600.2.p locus=Potri.001G462600 ID=Potri.001G462600.2.v4.1 annot-version=v4.1 ATGGCAAAACCAACCCTTTTAGCCGTCCTTGTAATCCTTATCTTCAATATAACTTCTTCTTCTTTCTCTGCCGCGGCTGATGGTGATGATTCAGTTTATG AATCTTTCCTTCAATGCCTAGAAAGCAACACAAACCCACAAGACGAAATCTCTAAACTTGTTTACTCACAATCTAGCACATCTTACACTTCAGTTTTAAG AGCTTACATAAGAAACGCACGTTACAATACCTCAGCAACTCCGAAGCCAGTTGTCATTGTAACTCCAACTCAAATATCCCATGTTCAAGCCACGGTTATT TGCACAAAAAAAGTTGGTTACCAACTCAAAATCAGAAGTGGTGGACATGATTATGATGGGATTTCCTACGTTTCTGACATGCCCTTTTTCGTTCTTGACA TGTTTAATCTCAGATCTATTGAAGTTAATGTCAACGATGAGTCTGCTACTGTTCAAGCAGGGGCTACTCTTGGTGAACTTTATTATAAAATCTGGGAGAG CAGCAAAGTTCATGGTTTTCCTGCTGGGGTTTGTCCCACGGTTGGTGTTGGTGGGCATTTAAGTGGTGCGGGTTATGGCAATATGTTAAGGAAATATGGG TTGTCGGTTGATAATGTAGTGGATGCAGAAATTGTTGATGTTAATGGGAAACTTCTTGATAGGAAAGCAATGGGGGAGGATCTTTTTTGGGCAATTCGTG GAGGTGGTGGTGGAAGTTTTGGGGTTATAATTTCTTACAAGATCAAGCTTGTTTCTGTTCCTGAGACAGTTACTGTTTTCAGAGTAGAAAGAACACTTGA ACAGAATGCTACTGATGTTGTTTACAAGTGGCAATTAGTTGCTCCTCAAACAAGTAATGATCTTTTCATGAGGATGCTCTTGCAGCCTGTGACAAGGAAC GGTAATCAGACTATTAGAGCCTCAATTGTGACATTGTATTTAGGGAATTCTGATAGTCTTGTGGCTTTATTGGGAAAAGAATTCCCTGAATTGGGATTGA AGAAGGAGGATTGTAATGAGACAAGTTGGATTCAGTCTGTGATGTGGTGGGATGAGTCTCAAAATCTTGGAAAGTCGCCTGATGTTCTTCTTGATAGGAA TCCTAATGATGCCAATTTCTTGAAGAGGAAATCAGATTATGTTCAGAATCCAATATCAAAAGATGGGTTGGAATGGTTGTGGAAAAAGATGATTGAAGTA GGCAAGACTGGATTGGTTTTCAATCCTTATGGTGGTAGAATGAATGAAATTCCTGCCTCAGAAACTCCATTCCCTCACAGGGCAGGCAATTTGTTCAAGG TGCAGTATTCAGTGAATTGGGAAGAAGCAGGAAGCGAGGCAGACAAGAATTTCATGACTCAAATAAGGAGGCTTCACAGTTACATGACCCCATTTGTTTC CAAGAATCCAAGGAGTTCATATCTGAACTATAGGGATCTTGACATTGGTGTTATGGAGGCTGGTAAAGATAGTTTCGAACAGGGTAGTGTTTATGGCTAC AAGTATTTCAATGACAATTTTGATAGGTTGGTGAAAGTAAAGACTGCTGTTGATCCAGAAAATTTCTTCAGGAATGAGCAGAGCATCCCTACTTTACCAA GTAAGGCATAG
AA sequence Show only first row Show all	>Potri.001G462600.2 pacid=42791083 polypeptide=Potri.001G462600.2.p locus=Potri.001G462600 ID=Potri.001G462600.2.v4.1 annot-version=v4.1 MAKPTLLAVLVILIFNITSSSFSAAADGDDSVYESFLQCLESNTNPQDEISKLVYSQSSTSYTSVLRAYIRNARYNTSATPKPVVIVTPTQISHVQATVI CTKKVGYQLKIRSGGHDYDGISYVSDMPFFVLDMFNLRSIEVNVNDESATVQAGATLGELYYKIWESSKVHGFPAGVCPTVGVGGHLSGAGYGNMLRKYG LSVDNVVDAEIVDVNGKLLDRKAMGEDLFWAIRGGGGGSFGVIISYKIKLVSVPETVTVFRVERTLEQNATDVVYKWQLVAPQTSNDLFMRMLLQPVTRN GNQTIRASIVTLYLGNSDSLVALLGKEFPELGLKKEDCNETSWIQSVMWWDESQNLGKSPDVLLDRNPNDANFLKRKSDYVQNPISKDGLEWLWKKMIEV GKTGLVFNPYGGRMNEIPASETPFPHRAGNLFKVQYSVNWEEAGSEADKNFMTQIRRLHSYMTPFVSKNPRSSYLNYRDLDIGVMEAGKDSFEQGSVYGY KYFNDNFDRLVKVKTAVDPENFFRNEQSIPTLPSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.001G462600 [exp]	0	1
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.002G205500 [exp]	9.27	0.8170	MRP4.1
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.007G026500 [exp]	12.00	0.8042
AT5G50860			Protein kinase superfamily pro...		Potri.012G103900 [exp]	19.05	0.7965
AT4G34950			Major facilitator superfamily ...		Potri.009G132700 [exp]	20.12	0.8027
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	61.13	0.7228	B5.2
AT1G18900			Pentatricopeptide repeat (PPR)...		Potri.015G066400 [exp]	62.35	0.7936
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.014G127200 [exp]	81.24	0.7732
AT2G22590			UDP-Glycosyltransferase superf...		Potri.014G088400 [exp]	99.10	0.7613
AT3G59430			unknown protein		Potri.007G128500 [exp]	105.42	0.7207
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.005G240200 [exp]	113.73	0.7197	Pt-CYP1.1

Compare expression of checked genes

Potri.001G462600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.