Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64295 120 / 5e-31 F-box associated ubiquitination effector family protein (.1) AT1G64290 103 / 8e-25 F-box protein-related (.1) AT5G41720 89 / 9e-21 unknown protein AT5G49610 82 / 2e-17 F-box family protein (.1) AT2G05360 59 / 1e-09 unknown protein AT5G03970 53 / 1e-07 F-box associated ubiquitination effector family protein (.1.2) AT1G12870 51 / 6e-07 F-box and associated interaction domains-containing protein (.1) AT1G13200 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT4G19940 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT1G30790 42 / 0.0004 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038000 [exp] 297 / 6e-99 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 278 / 6e-91 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.008G214000 [exp] 229 / 1e-72 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.014G187100 [exp] 224 / 1e-70 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 222 / 6e-70 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.017G066400 [exp] 209 / 1e-64 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.006G167500 [exp] 198 / 4e-61 AT1G64290 118 / 2e-30 F-box protein-related (.1) Potri.015G028500 [exp] 85 / 4e-18 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.010G149000 [exp] 81 / 9e-17 AT5G49610 528 / 0.0 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017086 [exp] 88 / 2e-19 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 86 / 2e-18 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10011415 [exp] 67 / 3e-12 AT5G41720 52 / 1e-07 unknown protein Lus10015048 [exp] 59 / 3e-09 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10024021 [exp] 58 / 5e-09 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10041733 [exp] 55 / 4e-08 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10003922 [exp] 54 / 1e-07 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 54 / 1e-07 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014320 [exp] 52 / 4e-07 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10028682 [exp] 47 / 1e-05 AT5G49610 62 / 2e-10 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G462650.1 pacid=42788413 polypeptide=Potri.001G462650.1.p locus=Potri.001G462650 ID=Potri.001G462650.1.v4.1 annot-version=v4.1 ATGGGTTCTACTCAGAATCTTGATTCGGATACTGATGAATCAACTTCAAAGAATGTCCATAGCCAGAGAACCGAAAGCATATCTGGCTTTGTCATGCAAA GAATAATAAGGTCAGGATTTTCTTCTATCTTTTTGTCTCCTGACAATACAACTTCGCGTCCTACACTATCCCTCGATTTCTTACCTTGTTCTGTAAAGAT TGAGGCTTCGACAAACCAAGGTCTCTTGCTTTGCACGCATTTCCCGCCAACATATCGAAACATTCCGAAGGTTTATGTGTGCAAGCCCACTACAAAACAA TGGAAACAAATTCCGAATCCAAAGACTCGATATAGGAATAAAGCAATTGGTATGATTGTGTTAAGTTCAAGACCTTTGCATTACAAGATTGTGAGATTTT CTCAGCCTAAGTTTCGTACAGATAGAGATTCCTATCGATTTAATAATCTTCGATGCGAGGTTTTTGATTCAAAGATCCATGCATGGAAGCAACTGAAGGA AGTGATTTTGTACGAGTCATTCATTGGTTTTAATCCTTCTGTATCTGCTTGTGGTTCACTTCATTGGCTTACGTTTGGATGTAAAATTTTTGCCTTCCAT GTGAAGGAAGAGATATATAGCATGATTTCGCTACCCGAACCGGTTCGTAAGAATTATCATCAAAAGATCATGATGCTCGGTGAGTTTGAGGGAAATCTTG CCCTAATATGTAAAGAGGAAGGCGAACGTTTCATGGAGCTATGGATCATCGAGAACTATGATAGAAAAATATGGAAGAAGAAGCAGATAGTGAACTTTGA AGCTTTAACAAAAGAGTTACCATATATTATCCTTACTGGCGTCTGCAATGCTAATGTTGCATTAAGGGATGGAATTGATAAGTTGACATTTTTCAACTTA AAAGATGGAAGAACTAAACCTTTGAGACTGGAGATGGGCTTTGATGTTGTGGAGACCTTTTCATTTGAGTCAGATTTTGAGCCTTATGTGGATGAATCTG TGTTGGAGGATTCAAGAGGAAATCAAGAACAAGAGAATTGA
AA sequence Show only first row Show all	>Potri.001G462650.1 pacid=42788413 polypeptide=Potri.001G462650.1.p locus=Potri.001G462650 ID=Potri.001G462650.1.v4.1 annot-version=v4.1 MGSTQNLDSDTDESTSKNVHSQRTESISGFVMQRIIRSGFSSIFLSPDNTTSRPTLSLDFLPCSVKIEASTNQGLLLCTHFPPTYRNIPKVYVCKPTTKQ WKQIPNPKTRYRNKAIGMIVLSSRPLHYKIVRFSQPKFRTDRDSYRFNNLRCEVFDSKIHAWKQLKEVILYESFIGFNPSVSACGSLHWLTFGCKIFAFH VKEEIYSMISLPEPVRKNYHQKIMMLGEFEGNLALICKEEGERFMELWIIENYDRKIWKKKQIVNFEALTKELPYIILTGVCNANVALRDGIDKLTFFNL KDGRTKPLRLEMGFDVVETFSFESDFEPYVDESVLEDSRGNQEQEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64295			F-box associated ubiquitinatio...		Potri.001G462650 [exp]	0	1
AT1G04360			RING/U-box superfamily protein...		Potri.001G235100 [exp]	9.16	0.6223
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	21.90	0.5686
AT1G14430			glyoxal oxidase-related protei...		Potri.010G034200 [exp]	22.78	0.6227
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.003G119000 [exp]	30.29	0.6192
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.018G151800 [exp]	49.19	0.5786
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.008G127000 [exp]	70.19	0.4967
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G007300 [exp]	80.31	0.5538
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	104.20	0.5446
					Potri.001G190450 [exp]	123.13	0.4899
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	142.45	0.4859

Compare expression of checked genes

Potri.001G462650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.