Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 525 / 0 FAD-binding Berberine family protein (.1) AT5G44360 513 / 1e-178 FAD-binding Berberine family protein (.1) AT5G44400 509 / 5e-177 FAD-binding Berberine family protein (.1) AT2G34790 508 / 1e-176 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT4G20860 508 / 2e-176 FAD-binding Berberine family protein (.1) AT5G44390 508 / 2e-176 FAD-binding Berberine family protein (.1) AT4G20840 504 / 9e-175 FAD-binding Berberine family protein (.1) AT4G20820 501 / 8e-174 FAD-binding Berberine family protein (.1) AT5G44440 497 / 2e-172 FAD-binding Berberine family protein (.1) AT5G44380 493 / 2e-170 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158600 [exp] 913 / 0 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 640 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 613 / 0 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 603 / 0 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 602 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 601 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 601 / 0 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 600 / 0 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 598 / 0 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023363 [exp] 597 / 0 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 529 / 0 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 525 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 517 / 1e-179 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 516 / 3e-179 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 503 / 2e-174 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 495 / 2e-171 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10026290 [exp] 488 / 2e-168 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 486 / 6e-168 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 484 / 5e-167 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G462700.1 pacid=42791794 polypeptide=Potri.001G462700.1.p locus=Potri.001G462700 ID=Potri.001G462700.1.v4.1 annot-version=v4.1 ATGGAAAGATCAAACTTCAGCATGCGTCTTTTACTTCTTATACTTTTAGTCTCTTTAGCTCGGTCTGCAGATTCAAGTTCATCTCATGAGATGTTCTTGC AATGCTTTTCATCTCATATCCAGCATTCCAAATCATATTCAGAAGTTATCCTTACTAAAAATAGCTCTGCTTACTCATCGGTTCTGCAGTCATCCATTCG AAATTTCAGATTCTTGAACACTTCAACTCTGAAACCTCAATTTATAATCACTCCATTTAATGAGTTTGAAATCCAAGCAGCCATTGTTTGTGCCAAGAAA TATGATATGCAAATAAGAGTTCGAAGTGGAGGCCACGACTACGAGGGCCTGTCTTTCCTGTCTTATCAAGAATTTGTACTTGTTGATCTTGCTGAACTTA GTTCCATCAGTGTTGACATCGAGAATGAGACGGCATGGATCGGGGCAGGTGCAAGCATAGGAGAGTTATATTACAGAATTGCGGAGAAAAGCAAGGTTCA TGGCTTCCCGGCAGGTACTTGTCCTACGGTAGGAGTTGGGGGACACTTCAGTGGAGGTGGATTTGGTACCATATTCAGGAAGTATGGCTTAGCAGCTGAT AATCTTATTGATGCTAGGATAGTTGATGCTAATGGAAGAATTCTTGATAGAGAATCAATGGGAGAAGATCTTTTTTGGGCCATTCGAGGAGGGGGAGCGG CTAGCTTTGGAGTCGTTTTCTCATGGAAAGTTAGATTGGTTTCGGTTCCTCCAACTGTAACTGTTTTCAATATCGGAAAGACCTTACAGCAAGGTGCATC CAATCTTCTTCACAAGTGGCAAAACATTGGAGATAAGCTTCATGAAGACCTTTTCCTCCATGCTACTATAGCAGTTGCTACCTCTAGCCCCAATGGCAAT AAAACTATTCAAGTTTCGTTTGTGTCATTGTTTCTTGGCAGGGCTGAGGAACTTCTCCCTATGATGCAAGATAGCTTCCCTGAGTTGGGCTTAATGCGCG AAAACTGCAGTGAAATGAGTTGGATCCAATCTGTCCTCTATTTTGGTGGCTTCTCACCAAGTGACTCCTTAGATGTTCTACTTAGCAGGACTGCTCAGTT TAAGGGATTCTTCAAAGGGAAATCGGATTACGTTAAGGAACCTATTTCAGAAACTGGCCTGGAAGGGCTGTATAAAAGGCTCCTTGAAGAGGAGACGTCA ATGTTGATCTTGACACCTTATGGAGGGAGAATGAGTGAGATTTCGGACTCAGAAACACCTTTCCCACATAGAAGTGGGAATATTTTCGAAATCCAGTACA TTATAACTTGGGATGTGGAAGAGGAAACAGAGAAGAACCTAAAATGGATGAGAAAACTGTATGCCTACATGGCCCCTTACGTTTCAAACTCACCAAGAGC TGCCTATCTCAACTACAGAGATCTTGATTTGGGCAGGAATAATTATGGAAATACCAGCTTTGCGAAGGCAAGTGTTTGGGGCTTGAAGTATTTCAAGAAC AACTTTAAGAGACTAGCGCGGGTTAAGACTGCAACAGATCCTTCCAATTTCTTCAGGAATGAACAAAGCATTCCTGTGCTGCAAAGAAAAAGGAACCTCA AATAA
AA sequence Show only first row Show all	>Potri.001G462700.1 pacid=42791794 polypeptide=Potri.001G462700.1.p locus=Potri.001G462700 ID=Potri.001G462700.1.v4.1 annot-version=v4.1 MERSNFSMRLLLLILLVSLARSADSSSSHEMFLQCFSSHIQHSKSYSEVILTKNSSAYSSVLQSSIRNFRFLNTSTLKPQFIITPFNEFEIQAAIVCAKK YDMQIRVRSGGHDYEGLSFLSYQEFVLVDLAELSSISVDIENETAWIGAGASIGELYYRIAEKSKVHGFPAGTCPTVGVGGHFSGGGFGTIFRKYGLAAD NLIDARIVDANGRILDRESMGEDLFWAIRGGGAASFGVVFSWKVRLVSVPPTVTVFNIGKTLQQGASNLLHKWQNIGDKLHEDLFLHATIAVATSSPNGN KTIQVSFVSLFLGRAEELLPMMQDSFPELGLMRENCSEMSWIQSVLYFGGFSPSDSLDVLLSRTAQFKGFFKGKSDYVKEPISETGLEGLYKRLLEEETS MLILTPYGGRMSEISDSETPFPHRSGNIFEIQYIITWDVEEETEKNLKWMRKLYAYMAPYVSNSPRAAYLNYRDLDLGRNNYGNTSFAKASVWGLKYFKN NFKRLARVKTATDPSNFFRNEQSIPVLQRKRNLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	3.00	0.9877
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	4.00	0.9805
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	4.24	0.9848
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268900 [exp]	5.09	0.9775
					Potri.017G111150 [exp]	5.29	0.9813
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	5.91	0.9835
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	7.48	0.9848
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466166 [exp]	7.74	0.9478
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	8.48	0.9831
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	9.79	0.9778

Compare expression of checked genes

Potri.001G462700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.