Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26710 291 / 6e-99 CCB1 cofactor assembly of complex C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035119 [exp] 304 / 4e-104 AT3G26710 301 / 2e-103 cofactor assembly of complex C (.1) Lus10031981 [exp] 297 / 2e-101 AT3G26710 299 / 1e-102 cofactor assembly of complex C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12046 [poplar] [flax] CCB1 Cofactor assembly of complex C subunit B
Representative CDS sequence Show only first row Show all	>Potri.001G463200.2 pacid=42793091 polypeptide=Potri.001G463200.2.p locus=Potri.001G463200 ID=Potri.001G463200.2.v4.1 annot-version=v4.1 ATGGCAGCAGCTAAAACATTATCACCCCATCCTTTTCCTTCCATTTTTCTACCCTCGAAGTCGAAACTGAGCAGCAACACTACTGAATTATTCAACCATC GCCACCACCGACACCACAACCGTCAACCATGGCTAGGACAAGCTGGAGTGATCTCCACAAGACCAAAGAGGGTGATGATTCGAGTCTCCTCTCAGCTCCA GGAACATCTCCTGTCTTCCTCTGTTGTTATGGAACAGCTTCAAAACCAAGAATCCATGTTTGTAGTTGCAGAAAGTGCTGCTAGTTACTCATTGGCTAGC TACTACACTTCTCTGGGACTCTTTGTCATCTCTGTTCCAGGCCTCTGGTCTCTTATCAAGCGCTCTGTTAAATCCAAGATTGTGCAGAAAACATTTACAG GGGAAGGGGAAGGGAAGAAAGAACCAGCTCAGGTTGCGGGAGAAATCTTATCTTTTTTCACTCGCAACAATTTTGCTGTCACTGGTAGAGGAGAGACCAT TACGTTTGAGGGAATGATGGTTCCAAACCGAGGCCAGGCAGCATTGCTTACTTTCTGCACTTGCATTAGCCTCGCTAGCGTTGCGCTTGTGCTTACCATA ACTTTTCCAGACTTTGGTAACAATTGGTTCTGGATCACCATTCTAAGTCCATTGGCAGGAGCGTACTACTGGAAGCGAGCATCAAGGAAAGAGGAGATCA AGGTTAAAATGATGGTTGCAGATGATGGGACCTTATCAGAGATCGTTGTTCAAGGTGATGATCAGCAAGTAGAGCAAATGAGGAAGGACCTTCAGTTCAG TGAAAAAGGTATGGTGTATGTCAAAGGCATATTCGAGAGATGA
AA sequence Show only first row Show all	>Potri.001G463200.2 pacid=42793091 polypeptide=Potri.001G463200.2.p locus=Potri.001G463200 ID=Potri.001G463200.2.v4.1 annot-version=v4.1 MAAAKTLSPHPFPSIFLPSKSKLSSNTTELFNHRHHRHHNRQPWLGQAGVISTRPKRVMIRVSSQLQEHLLSSSVVMEQLQNQESMFVVAESAASYSLAS YYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFTGEGEGKKEPAQVAGEILSFFTRNNFAVTGRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTI TFPDFGNNWFWITILSPLAGAYYWKRASRKEEIKVKMMVADDGTLSEIVVQGDDQQVEQMRKDLQFSEKGMVYVKGIFER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26710		CCB1	cofactor assembly of complex C...		Potri.001G463200 [exp]	0	1
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.018G063200 [exp]	4.24	0.9578	Pt-CPN21.2
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	4.47	0.9577
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104900 [exp]	4.89	0.9543
AT1G16080			unknown protein		Potri.003G185754 [exp]	5.47	0.9681
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156700 [exp]	5.47	0.9695
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Potri.001G344800 [exp]	5.47	0.9322
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Potri.009G062500 [exp]	7.48	0.9664
AT1G16080			unknown protein		Potri.003G185901 [exp]	9.05	0.9242
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	9.79	0.9440	Pt-GSA1.1
AT1G16080			unknown protein		Potri.003G185501 [exp]	10.72	0.9629

Compare expression of checked genes

Potri.001G463200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.