Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 427 / 1e-144 FAD-binding Berberine family protein (.1) AT2G34790 425 / 1e-143 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44380 395 / 4e-132 FAD-binding Berberine family protein (.1) AT5G44390 395 / 4e-132 FAD-binding Berberine family protein (.1) AT4G20860 371 / 8e-123 FAD-binding Berberine family protein (.1) AT4G20820 368 / 1e-121 FAD-binding Berberine family protein (.1) AT5G44440 365 / 2e-120 FAD-binding Berberine family protein (.1) AT1G30700 337 / 1e-109 FAD-binding Berberine family protein (.1) AT1G26390 333 / 3e-108 FAD-binding Berberine family protein (.1) AT1G34575 326 / 2e-105 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463300 [exp] 477 / 5e-164 AT1G30760 622 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 474 / 3e-163 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 474 / 3e-163 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 474 / 7e-163 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 473 / 1e-162 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 473 / 2e-162 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161600 [exp] 473 / 3e-162 AT5G44400 631 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 471 / 1e-161 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 469 / 5e-161 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018119 [exp] 385 / 3e-128 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023363 [exp] 380 / 1e-126 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 375 / 5e-124 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 362 / 3e-119 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 358 / 1e-117 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 352 / 5e-115 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10009009 [exp] 342 / 2e-111 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10026290 [exp] 338 / 6e-110 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 334 / 4e-108 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 313 / 3e-100 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G463550.1 pacid=42790431 polypeptide=Potri.001G463550.1.p locus=Potri.001G463550 ID=Potri.001G463550.1.v4.1 annot-version=v4.1 ATGACAAGAATACCCTTTAATCTTAGAGTTAAATTTATTGGCATCAAGGGCACGGAGTATACACCAAACAACTCTTCATTCACACCTATATTGGTATCTT CTGCTTACAACCTCAGGCTTACATTGCCTTCTGTACCGAAACCTGAGTTCATCTTCACTCCTTTGAACGAATCTCACATCCAAGCTGCTGTAATTTGCTC AAAACATCTTGGAATCCACATTAGAGTCCGTAGAGGAGGTCATGACTATGAGGGAGTCTCTTATGTTTCTGAAATTGAAACTCCTTTCATTGTTGTAGAC ATTACTCAGTTTCGTTCTATTAGCGTTGATATAAATGATAATAGCGTATGGGTTCAGGCAGGTGCCACAAATGGCGAACTCTATTACAGAATTGCTGAGA AAAGTAGGACTCTTGGCTACCCTGCCGGTACTGCGACAAGTTTAGGTATTGGCGGGCACATTACAGGAGGTGCATATGGTGCCATGTTGAGAAAATATGG CCTTGGTGCGTACATTGTCATTGATGCTCGTATAATTGATTCTCGTGGAAGAGTTCTTGATCGGAAGGCCATGGGGGAAGATCTTTTTTGGGCAATTAGT GGAGGTGGAGGAGGCAGCTTTGGAATCATTACTGCCTGGAAGGTCAAATTGGTTCCTGTAACATCAACCGTGACAGTGTTTACTGTTTCTAAGACCTTAG AGCAATGCTTTCCAGAATTGGGTTTAACTCAGCAGGATTGCGTTGAAGCAAGCTGGATCATCAGTTCTGCAGTATATTTGGCTGGCTATTCCACTGCCAC TCCTGAAATTTTACTTCAAAGAAACAGAACCTTCAGCACCTGCTTCAAAGCCAAATCAGATCGCGCCAAAGAAGCCATTCCTGAAACTGCACTTGAAGGG TTGTGGCAAAGGTTGCTTGCAGAAGACAATGCTGTAGTAGTTTTTACTCCTTATACAACTTTTAACTCTTTGTTTCTTGGAAGAACTGATCAGCTCCTTG AAAGAATGGAGGAAAGTTTTCCTGACTTGGGCTTAAGGAGTATAGATTGTACTGAAATGAGCTGGATTGAGTCCATCCTTTACTTCTCAGTGTACCCTGA AGGGGAAACTCTGGAAGCCCTTGTAAATAGGAAACCCGAACCAAAAGGCTTCTTCAAGGCGACAACAGATTTTGTTGAGCATCCTATAGCAGAGCCTGTT TTGGAAAAGCTATGGAATTGGTGTTTGGAAGAAGAGAAGCCGATATTGATCATGGAACCTTATGGTGGAAGAATGGAGGAAATATCAGAAGCAGAAACTC CATTTCCGTATAGAGAAGGAATTCTGTACAACATACAGTATTTTGTCAAGTGGGAAGACGGGGACAATATCATGTCATCACAAAGGCACATAAATTGGAT AAGGTCCATATATGAGAACATGACACCATATGTGTCTAAGAATCCAAGGGGTGCCTGCGTGAACTACAGAGATTTGGATTTGGGTAAGAATGATGAAGCT GCAAAATGGGGTCATAAGTATTTCAAGAACAATTTTGAGAGGCTGGAGATTGTGAAGGGTATGGTTGATCCTTGCAATTTTTTTGCTTATGAACAAAGCA TACCATTACCACCCCTCAATTTGAGTGAAGGAAAGAGGGAAGTGGAATGA
AA sequence Show only first row Show all	>Potri.001G463550.1 pacid=42790431 polypeptide=Potri.001G463550.1.p locus=Potri.001G463550 ID=Potri.001G463550.1.v4.1 annot-version=v4.1 MTRIPFNLRVKFIGIKGTEYTPNNSSFTPILVSSAYNLRLTLPSVPKPEFIFTPLNESHIQAAVICSKHLGIHIRVRRGGHDYEGVSYVSEIETPFIVVD ITQFRSISVDINDNSVWVQAGATNGELYYRIAEKSRTLGYPAGTATSLGIGGHITGGAYGAMLRKYGLGAYIVIDARIIDSRGRVLDRKAMGEDLFWAIS GGGGGSFGIITAWKVKLVPVTSTVTVFTVSKTLEQCFPELGLTQQDCVEASWIISSAVYLAGYSTATPEILLQRNRTFSTCFKAKSDRAKEAIPETALEG LWQRLLAEDNAVVVFTPYTTFNSLFLGRTDQLLERMEESFPDLGLRSIDCTEMSWIESILYFSVYPEGETLEALVNRKPEPKGFFKATTDFVEHPIAEPV LEKLWNWCLEEEKPILIMEPYGGRMEEISEAETPFPYREGILYNIQYFVKWEDGDNIMSSQRHINWIRSIYENMTPYVSKNPRGACVNYRDLDLGKNDEA AKWGHKYFKNNFERLEIVKGMVDPCNFFAYEQSIPLPPLNLSEGKREVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	0	1
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	2.23	0.8388
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.003G149000 [exp]	6.24	0.7845	LBD3.1
AT1G26100			Cytochrome b561/ferric reducta...		Potri.008G115200 [exp]	7.21	0.8306
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	7.34	0.8022
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	7.34	0.8200
AT2G30690			Protein of unknown function, D...		Potri.002G042500 [exp]	9.38	0.8184
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	14.14	0.7672
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	20.78	0.7760
AT3G06840			unknown protein		Potri.003G073200 [exp]	22.02	0.8092
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	22.95	0.7581

Compare expression of checked genes

Potri.001G463550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.