Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34780 360 / 5e-103 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161901 [exp] 2301 / 0 AT2G34780 252 / 7e-68 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.007G004001 [exp] 231 / 6e-70 AT2G34780 55 / 2e-09 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023360 [exp] 529 / 3e-160 AT2G34780 312 / 2e-87 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Lus10038447 [exp] 416 / 8e-119 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G463700.3 pacid=42793200 polypeptide=Potri.001G463700.3.p locus=Potri.001G463700 ID=Potri.001G463700.3.v4.1 annot-version=v4.1 ATGACTGCTGATGTTTCAGTAAAGAAGGAAGCCACAGTGAGTAATCCATGCTGCAATGTGTGGAAGGAGAAGTGTAGGAAGTTGGAAGAGGGAAGGAAGA GTTTGAGGCAAGCAGTTAAGCTTTTGACAGAACAAGCCGATAAACTTCAGGCTAAGAATGTTAGTCTCAAGAAGGCATGTGAGGAAGAGAGAGTGAAGGT GGAGGCTGAGAAAGGGGGGAAAGAGAAAGAAGCAGCTTTGAGAGTTATGTTGGACAATGAGATTTTTGCTCTTAAGTCTGAAATATCCACCTTACAGCAG AAGGGAAGTGCAAATTCAGAAGATGAAAATGGAGAGGTTAAGCTGCTTCAAGATCAGGTTTTTGAAGGAGAGAAGGAAATCAGCAGGCTCAAGGAGCTTC TTGAGGGAGAGAAAATAAGAGCAGATTCTGAAAAGGAGAATGCTGAGGTGGAGAAGAAGAGTGCTGCTGATGCATTGAAACATGTCAAAGCTGAGGAAGA GGGGAAAGAGAAAGAAGAGGCTTTGAGATTTTCGTTGGAAAATGAGATTTCTGCCCTTAAGTCTGAAATATCCACCTTACAGTGGAAGGGAAGTGCAGTT GCAGAAGAAAAAAATTGGGAGGTTAAGCTTCTTCAAGATCAAGTTTCTAAAGGGGAGAAGGAAATCAGTAGGCTCAAGGAGCTTCTTGAGATTGCGAAAA CAAGGGTGGATTCTGAAAAGAAGAATGCTGAGGTGGAGAAGAAAAGTGCCTCTGAAGCATGGAAACATGTGAAAGCTGAAAAAGCTAAGGCTGATGAAGA GAGGAAGCATGCTAGTAGTGAGGGGCTGAAGGTTGAGGAATATCAGCTTCAGTTGGAGGCGTTGAAGAAAGAAGCCGGATTAGCAAAATCAAAGTTGGCT TCTGAAACTTTGAAGTATGAAGAGGCAAACAAGAAGTTCGAAACAGAAAAACTCAAGGTGACCAAAGAGAGAAAGCGTGCTGATTCAGAGATGGCGAAAG CAGAGGTGAAGAAAAAGCTTGCAGAAGCAAACAGGAAGAAGCTTGCTGAAGAAAAATCTCACACTGAAAATCTTTCCAAGCAGTTGGAAGATGTGAGACA AAGAATTGAGGAACTACAGAAGGCTGAGGAATATCAGCTTCAGTTAGAGTCTTTAAAAAAAGAAGCTGCTGAATCAAAATCAAAGTTGGCTTCCGAGACT CTGAAGCTTGAAGATGCGAACAAAAAGTTAGAAGCAGAAAAAGCTAAGGTGATGGAAGAGAGAAAACGTGCTGATTCAGAGATGGCTAAAGCAAAGGAGC AGAAGAAACTTGCTGAAACAAATGGAATGAAGGTCGTAGAGGAAAAGTCTCATGCTGATAATCTTTCTCGGCAGTTGGAAGATGCTAGAATAAAGATTGA GGAGCTGGAGAAGGGGATAAATAGATTCATGCTCACCAAAAATATGGGTGGGGCTTTTGATGATCAACATGAAATTTTGAATGGTGAAGCTGCCACAATT AGGTTTAGGGATTTATTGGAAAATTTGAAGAACAATTCAGATCAATCAAAGCTGGTTTTGGAGTTCTTAAATTCCGAGAAGGCTAACAAAAGGTTAGATA TTGAGAAGGCAAAAGCTATTGCTGAGAAAAAACGTGCAGATTTGGAGATGCTGAAAGCAGAAAAGCTTAAAAAGCTTGCAGAAATGAATAGGAAGGTGGC AGCAGAAGAAAAATCTCGTGCTGATCAGTTGTCTCAACAGCTAGAAGAATATAAAATAAAAATTGAAGGATGGCAGAAGCAGATACAGGAACTCCTGTCC TCCAAAAAAATGGTCGTGGCTTCTTCAGGTTTACCTGACAAAGTTCTGAATGTGGAGAAGACAAAACTGAAGCTCTTGGAAAAACAAGTGAAGCTTGAAA AGAGGCGATTAAAGCATGCCAAAGAAGGGGCTAAGATGGAAATAAACCGTAATGGTATTCTACAGCAAGAACTAGCTTGCTTGAAACTTCATTTTGGTCA AATGCTGTTTCGCCTGGATGTACTGGATAAATATTTCTCATGTAGCAATGGGGGTACAGAGAAAATGGAAAAGGTTGGGAACCTCGGAACCATGCAAAGG TCAAAGTTGAAGAGAAAACTGTGTGCAGAAGAACCATTTCAGACGCATCCTAATAATGAAAGTGAACTTCTGAAGCCTAGCTGTTTGGCTATGACCATCT CTGAACCTCTCACGCAGACACTTAACTGCACAGCTCCATTGGTTTCACCATCTGGTGGGAACTATACTGCATCCATCTCAGGTATTGATTCTAAATTGGA GTCTCTGCTTGGAGGCTCTAACCGAAAATTGTTACAGACTTCTGCAATAAATTCCAGTTCGGCATCTTTTTCTGATGGTCAGTTGGTCGGCTCACAGGAA AGGGGTGCGCTTGTTCCCACATCAAAGAACTTGGTAGAAGAGAACTTTAATGCTCAAACAACAATTTCCAGCATGTCTGGCGATGTCACTAAAGTACAGC ATGATGAAAATCTTGCTGTGGTAGCGGAAAATAGTGTTAGAAGTCCTCTTAGCATTGACATCATTGGAAGAGTTAATGGACACAGTAAGAAGAGGAGGAT CCTTGATGCAGTTGAATCTGTTGAACTTTTGTGTTCAGAGGGTAAGAAGCTGCACCTGCAGATGGAAGAGAAACTCTCTGCCTTGCATGGTATGTTTAAC AAACAAATTAAAAAATCACACGAAGATGCCATTGTGGAACCTAATATGCCAGGTGGTTCATATGCTAAGCATGAGAGGACTCATAAAACAAGAAAGGTAT CTTATGAAGAGAATGTAATTATCCACTGTTTTTCTGGCATAAATCAGCTAGAGAAGACCAAAAAAATTGGGAAAGAAGTCCTCGAAGATGCAAATGCCTG CGGATATACCTCCAATCCTGCCAATCTTATAATGGGAGCTTCAAAAGCATGCTGGGAAGGTTTGAGTGATTCTTTTGAAAGTAGCCCCGGAGATATGGTA AGTTTTGAGGAAGTAGCCAATGGGGATTTCATGAAATTGCTGGACTTGGATAACTCTGCAGATGAGGAATGTTACAGGAGAGCAATGGAAATGCCTATGT CCCCAACTCTTCCTGAGATAGGGTCTTCAGGTGCCGAAATATCTGCTAATAAACCCTTACTTGTTGAAAGCTTCCTTGGATGTTTACCAAATGGAAAGGA GTCTTTAGTGCCTTCTTTTAGATCAGATGCCATTGATGTAGAAATTAGTTCCAATCAACTGAAAGACAGATCCTTTGGAACTTCCCGTGCTGATTTACTG CATGAAAATGAAGGCCCTGCAGATTCCTTTGATATTCTAGGCAATAGAAGTGGCACTTGTAACAGCATGGATTCTGGAAAAGTTTCTGATGGTTGGACCA GGGATCCTGGATCTGATTTGGACACTGAGATGCTGAACATACCTAGTTCTAGATATGAGGGCCTGAAGTTTCCAATTGAAGGTGAACTTGGTTCTATACA TGACAATATTCCTAAATACTGTGTGATGTTTTCGGATATAAATGACACTATAAGCATGTCTAGAGTATTTTTTGCGACTCAAACTTGTTTGGCTCGCTGT TCTTTGGACATTCAAGCAGATTGTATGGTTCAAAAGATCTTGCGTGCTCTTAAAATGGAAGGGAAAATTTTACCCAAGGAGAAGGCTTGCACATTTTTCA CTTTACTGCTGCTGAATTTCTCTGCTAGCAATTGGGGGAAATTTCGAAGCTTTTCGGATCCGGATTTTCTCCTCGGCTTAGATTCTTTTGCCAGAGACAT AAATGCAGTTGTTTCTGATGTTGAGGCAAGAAACTTGTTTGCAGAAGTATGTTGTTTGGATGAGCTGCTTGGCCTCATTGAAGAATTCCTCCTAGATGGG AAATTGATGGTATATGCAGATCTATCTTCTGAACCATTGAGTGGATGTGATTTGATGATAGACATCCTTCTGGATGGTGTAAATATAAAATTTGCCTCCA AATCAGCTTCATCCAATCTTTTGGTGGCAGGGAGTATCATACTAGCATCAATATGTGCAGCAATTGACCACATTGGATTTCTTTGTCAGGCTTCATACAG TCTGTTGCGGATGCACAGATGTGATACTGTTTTTGCACTTACTATTCTTCACATTTTTGCTTACCTGGCTGGAGAGAAGTTTTTATCCCCGAGGAAGCAC AGTTTGACAATGACTGTGTTGAAATCAGTGATCATGTTTCTTGAAGGAGGAGATTCATCAGTTGCTTCAGCAGCTTCCAGTCTTACCATGTGTAAGGGCG GAATGTTCCATCCATGTGCTAAATGTCCCTTTTCAACTGATGTTGTCTCCATAGATATTGTTACGTCAATGCTTTTGGAAAAGCTTCAAAATTGTGCTGT TTCTGGAATCATGCATCATCTGATGGAATCACCCAGCTTATCAAACTCCAATGTACTATGCTGTAAGGATATAGCTAAACAGAGTTTAAGTCATGAAGTG ATTACTTCTGTCCTTGATTTGAATTGTGATGCATCCTGTAGTTTAAACAAGTGTGTGATACCTGCCCAATCAAATTCTATCATGAATGGGATCTTGTGTG ACCTGAGTGATCTTCTATCGTTGGTCGAGCTGCTTGCTTTCAATATGAGCTGGGAGTGGACCTGTGGAAAAATTATAACTGAGCTGTTGGAAATGCTAGA AAGAACAAAGTTAGACAGCTTTGCTGTTGCTGTGGTTACTCTCCTCGGTCAACTTGGAAGGCTTGGAGTTGCTGCTTGTGGCTATGAAGATAAAGGAGTA GAGAACTTGAGATATAAATTATCTGGCTTTCTTTCATGTGATGCTACCATCCAAATGGCTCTTCCTGTTCAAATTGCCCTGGCCACTTCTTTGCTAGCGC TACTTTCTCTAGAATTTGAAAAGGTTATCCAGAGCAATTGTAACCTTCCAGCAATTGCATGTCAATCCGTTTCCATTGATCATATAAGAAGCTGGTTTTA TTCACTGACCAAGGAGCGGCAAGTATTGTCACGCAGCCTCTTACAATCTTGTGATGTCCTATGA
AA sequence Show only first row Show all	>Potri.001G463700.3 pacid=42793200 polypeptide=Potri.001G463700.3.p locus=Potri.001G463700 ID=Potri.001G463700.3.v4.1 annot-version=v4.1 MTADVSVKKEATVSNPCCNVWKEKCRKLEEGRKSLRQAVKLLTEQADKLQAKNVSLKKACEEERVKVEAEKGGKEKEAALRVMLDNEIFALKSEISTLQQ KGSANSEDENGEVKLLQDQVFEGEKEISRLKELLEGEKIRADSEKENAEVEKKSAADALKHVKAEEEGKEKEEALRFSLENEISALKSEISTLQWKGSAV AEEKNWEVKLLQDQVSKGEKEISRLKELLEIAKTRVDSEKKNAEVEKKSASEAWKHVKAEKAKADEERKHASSEGLKVEEYQLQLEALKKEAGLAKSKLA SETLKYEEANKKFETEKLKVTKERKRADSEMAKAEVKKKLAEANRKKLAEEKSHTENLSKQLEDVRQRIEELQKAEEYQLQLESLKKEAAESKSKLASET LKLEDANKKLEAEKAKVMEERKRADSEMAKAKEQKKLAETNGMKVVEEKSHADNLSRQLEDARIKIEELEKGINRFMLTKNMGGAFDDQHEILNGEAATI RFRDLLENLKNNSDQSKLVLEFLNSEKANKRLDIEKAKAIAEKKRADLEMLKAEKLKKLAEMNRKVAAEEKSRADQLSQQLEEYKIKIEGWQKQIQELLS SKKMVVASSGLPDKVLNVEKTKLKLLEKQVKLEKRRLKHAKEGAKMEINRNGILQQELACLKLHFGQMLFRLDVLDKYFSCSNGGTEKMEKVGNLGTMQR SKLKRKLCAEEPFQTHPNNESELLKPSCLAMTISEPLTQTLNCTAPLVSPSGGNYTASISGIDSKLESLLGGSNRKLLQTSAINSSSASFSDGQLVGSQE RGALVPTSKNLVEENFNAQTTISSMSGDVTKVQHDENLAVVAENSVRSPLSIDIIGRVNGHSKKRRILDAVESVELLCSEGKKLHLQMEEKLSALHGMFN KQIKKSHEDAIVEPNMPGGSYAKHERTHKTRKVSYEENVIIHCFSGINQLEKTKKIGKEVLEDANACGYTSNPANLIMGASKACWEGLSDSFESSPGDMV SFEEVANGDFMKLLDLDNSADEECYRRAMEMPMSPTLPEIGSSGAEISANKPLLVESFLGCLPNGKESLVPSFRSDAIDVEISSNQLKDRSFGTSRADLL HENEGPADSFDILGNRSGTCNSMDSGKVSDGWTRDPGSDLDTEMLNIPSSRYEGLKFPIEGELGSIHDNIPKYCVMFSDINDTISMSRVFFATQTCLARC SLDIQADCMVQKILRALKMEGKILPKEKACTFFTLLLLNFSASNWGKFRSFSDPDFLLGLDSFARDINAVVSDVEARNLFAEVCCLDELLGLIEEFLLDG KLMVYADLSSEPLSGCDLMIDILLDGVNIKFASKSASSNLLVAGSIILASICAAIDHIGFLCQASYSLLRMHRCDTVFALTILHIFAYLAGEKFLSPRKH SLTMTVLKSVIMFLEGGDSSVASAASSLTMCKGGMFHPCAKCPFSTDVVSIDIVTSMLLEKLQNCAVSGIMHHLMESPSLSNSNVLCCKDIAKQSLSHEV ITSVLDLNCDASCSLNKCVIPAQSNSIMNGILCDLSDLLSLVELLAFNMSWEWTCGKIITELLEMLERTKLDSFAVAVVTLLGQLGRLGVAACGYEDKGV ENLRYKLSGFLSCDATIQMALPVQIALATSLLALLSLEFEKVIQSNCNLPAIACQSVSIDHIRSWFYSLTKERQVLSRSLLQSCDVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.001G463700 [exp]	0	1
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	4.00	0.8695
AT3G09060			Pentatricopeptide repeat (PPR)...		Potri.016G111600 [exp]	4.47	0.8359
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	6.48	0.8533	MOM.2,1
AT3G19780			unknown protein		Potri.007G070400 [exp]	9.79	0.8058
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	12.84	0.8060
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	15.87	0.8444
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	19.49	0.8085
AT5G24350			unknown protein		Potri.015G008500 [exp]	20.39	0.7939
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	22.60	0.8329
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	28.46	0.8343

Compare expression of checked genes

Potri.001G463700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.